| /dports/biology/pbbam/pbbam-0.18.0/tests/src/ |
| H A D | test_SubreadLengthQuery.cpp | 26 EXPECT_GE((r.QueryEnd() - r.QueryStart()), 500); in TEST()
38 EXPECT_GE((r.QueryEnd() - r.QueryStart()), 1000); in TEST()
50 EXPECT_GE((r.QueryEnd() - r.QueryStart()), 5000); in TEST()
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| H A D | test_BamRecordClipping.cpp | 777 EXPECT_EQ(prototype.QueryEnd(), s0.QueryEnd()); in TEST()
815 EXPECT_EQ(507, s1.QueryEnd()); in TEST()
877 EXPECT_EQ(505, s2.QueryEnd()); in TEST()
939 EXPECT_EQ(506, s3.QueryEnd()); in TEST()
1131 EXPECT_EQ(prototype.QueryEnd(), s0.QueryEnd()); in TEST()
1231 EXPECT_EQ(507, s2.QueryEnd()); in TEST()
1292 EXPECT_EQ(508, s3.QueryEnd()); in TEST()
1383 EXPECT_EQ(clipEnd, s3.QueryEnd()); in TEST()
1442 EXPECT_EQ(506, s3.QueryEnd()); in TEST()
1502 EXPECT_EQ(clipEnd, s3.QueryEnd()); in TEST()
[all …]
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| H A D | test_BamRecordMapping.cpp | 97 EXPECT_EQ(qEnd, s1.QueryEnd()); in TEST()
129 EXPECT_EQ(qEnd, s1_rev.QueryEnd()); in TEST()
178 EXPECT_EQ(qEnd, s2.QueryEnd()); in TEST()
210 EXPECT_EQ(qEnd, s2_rev.QueryEnd()); in TEST()
259 EXPECT_EQ(qEnd, s3.QueryEnd()); in TEST()
291 EXPECT_EQ(qEnd, s3_rev.QueryEnd()); in TEST()
388 EXPECT_EQ(qEnd, s1.QueryEnd()); // QStart + seqLength in TEST()
469 EXPECT_EQ(qEnd, s2.QueryEnd()); // QStart + seqLength in TEST()
550 EXPECT_EQ(qEnd, s3.QueryEnd()); // QStart + seqLength in TEST()
645 EXPECT_EQ(510, mapped.QueryEnd()); // QStart + seqLength in TEST()
[all …]
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| /dports/biology/pbbam/pbbam-0.18.0/src/ |
| H A D | VirtualZmwBamRecord.cpp | 77 const auto stitchedSize = lastRecord.QueryEnd() - firstRecord.QueryStart(); in StitchSources()
154 virtualRegionsMap_[regionType].emplace_back(regionType, b.QueryStart(), b.QueryEnd()); in StitchSources()
165 virtualRegionsMap_[regionType].emplace_back(regionType, b.QueryStart(), b.QueryEnd(), in StitchSources()
196 this->QueryEnd(lastRecord.QueryEnd()); in StitchSources()
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| H A D | Validator.cpp | 199 const auto qEnd = b.QueryEnd(); in ValidateRecordCore()
226 const auto qEnd = b.QueryEnd(); in ValidateRecordRequiredTags()
259 (IsCcsOrTranscript(b.Type()) ? b.Sequence().size() : (b.QueryEnd() - b.QueryStart())); in ValidateRecordTagLengths()
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
| H A D | ensqcalignment.c | 460 pthis->QueryEnd = qca->QueryEnd; in ensQcalignmentNewCpy()
546 qca->QueryEnd = qend; in ensQcalignmentNewIni()
1278 qca->QueryEnd = qend; in ensQcalignmentSetQueryEnd()
1642 indent, qca->QueryEnd, in ensQcalignmentTrace()
1813 *Pend = qca->QueryEnd; in ensQcalignmentCalculateQueryCoordinates()
1817 *Pstart = qca->QueryEnd; in ensQcalignmentCalculateQueryCoordinates()
2595 end1 = qca1->QueryEnd; in ensQcalignmentCalculateQueryCoverageQueryQuery()
2598 end2 = qca2->QueryEnd; in ensQcalignmentCalculateQueryCoverageQueryQuery()
2605 end1 = qca1->QueryEnd; in ensQcalignmentCalculateQueryCoverageQueryQuery()
4218 qca->QueryEnd, in ensQcalignmentadaptorStore()
[all …]
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| H A D | ensqcvariation.c | 303 pthis->QueryEnd = qcv->QueryEnd; in ensQcvariationNewCpy()
398 qcv->QueryEnd = qend; in ensQcvariationNewIni()
692 return (qcv) ? qcv->QueryEnd : 0U; in ensQcvariationGetQueryEnd()
1096 qcv->QueryEnd = qend; in ensQcvariationSetQueryEnd()
1427 indent, qcv->QueryEnd, in ensQcvariationTrace()
2792 qcv->QueryEnd, in ensQcvariationadaptorStore()
2895 qcv->QueryEnd, in ensQcvariationadaptorUpdate()
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| /dports/biology/pbbam/pbbam-0.18.0/include/pbbam/ |
| H A D | Compare.h | 319 struct QueryEnd : public MemberFunctionBase<Position, &BamRecord::QueryEnd> struct
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| /dports/biology/diamond/diamond-2.0.13/src/output/ |
| H A D | clustering_variables.h | 58 class QueryEnd: public Variable{
229 regMap[QueryEnd::get_name()] = new QueryEnd(); in StaticVariableRegistry()
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| /dports/lang/mono/mono-5.10.1.57/mcs/class/referencesource/System.Core/System/Linq/Parallel/Merging/ |
| H A D | MergeEnumerator.cs | 73 m_taskGroupState.QueryEnd(true); in Dispose()
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| /dports/lang/mono/mono-5.10.1.57/external/corefx/src/System.Linq.Parallel/src/System/Linq/Parallel/Merging/ |
| H A D | MergeEnumerator.cs | 70 _taskGroupState.QueryEnd(true); in Dispose()
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| /dports/lang/mono/mono-5.10.1.57/mcs/class/referencesource/System.Core/System/Linq/Parallel/Scheduling/ |
| H A D | SpoolingTask.cs | 77 groupState.QueryEnd(false); in SpoolStopAndGo()
172 groupState.QueryEnd(false); in SpoolForAll()
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| H A D | QueryTaskGroupState.cs | 91 internal void QueryEnd(bool userInitiatedDispose) in QueryEnd() method in System.Linq.Parallel.QueryTaskGroupState
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| /dports/lang/mono/mono-5.10.1.57/external/corefx/src/System.Linq.Parallel/src/System/Linq/Parallel/Scheduling/ |
| H A D | SpoolingTask.cs | 73 groupState.QueryEnd(false); in SpoolStopAndGo()
167 groupState.QueryEnd(false); in SpoolForAll()
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| H A D | QueryTaskGroupState.cs | 85 internal void QueryEnd(bool userInitiatedDispose) in QueryEnd() method in System.Linq.Parallel.QueryTaskGroupState
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| /dports/lang/clover/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/libosmesa/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/libosmesa-gallium/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-gallium-xa/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-libs/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-dri-gallium/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-gallium-va/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-gallium-vdpau/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-devel/mesa-22.0-branchpoint-2059-ge8a63cf61ec/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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| /dports/graphics/mesa-dri/mesa-21.3.6/src/gallium/frontends/d3d10umd/ |
| H A D | Query.h | 51 void APIENTRY QueryEnd(D3D10DDI_HDEVICE hDevice, D3D10DDI_HQUERY hQuery);
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