| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers.cpp | 31 #define RAZERS_MATEPAIRS // enable paired-end matching macro
38 #define RAZERS_MATEPAIRS macro
57 #ifdef RAZERS_MATEPAIRS
177 #ifdef RAZERS_MATEPAIRS in mapReads()
255 #ifdef RAZERS_MATEPAIRS in main()
279 #ifdef RAZERS_MATEPAIRS in main()
291 #ifdef RAZERS_MATEPAIRS in main()
366 #ifdef RAZERS_MATEPAIRS in main()
431 #ifdef RAZERS_MATEPAIRS in main()
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| H A D | razers.h | 242 #ifdef RAZERS_MATEPAIRS
706 #ifdef RAZERS_MATEPAIRS
734 #ifdef RAZERS_MATEPAIRS
752 #ifdef RAZERS_MATEPAIRS
839 #ifdef RAZERS_MATEPAIRS
870 #ifdef RAZERS_MATEPAIRS
1004 #ifdef RAZERS_MATEPAIRS
1618 #ifdef RAZERS_MATEPAIRS
1658 #ifdef RAZERS_MATEPAIRS
2128 #ifdef RAZERS_MATEPAIRS
[all …]
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| H A D | razers_matepairs.h | 555 #ifdef RAZERS_MATEPAIRS
717 #ifdef RAZERS_MATEPAIRS
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| H A D | outputFormat.h | 744 #ifdef RAZERS_MATEPAIRS in dumpMatches()
776 #ifdef RAZERS_MATEPAIRS in dumpMatches()
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| /dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
| H A D | razers.cpp | 31 #define RAZERS_MATEPAIRS // enable paired-end matching macro
56 #ifdef RAZERS_MATEPAIRS
169 #ifdef RAZERS_MATEPAIRS in mapReads()
246 #ifdef RAZERS_MATEPAIRS in main()
271 #ifdef RAZERS_MATEPAIRS in main()
283 #ifdef RAZERS_MATEPAIRS in main()
348 #ifdef RAZERS_MATEPAIRS in main()
404 #ifdef RAZERS_MATEPAIRS in main()
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| H A D | razers.h | 2103 #ifdef RAZERS_MATEPAIRS
2128 #ifdef RAZERS_MATEPAIRS
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | splazers.cpp | 31 #define RAZERS_MATEPAIRS // enable paired-end matching macro
38 #define RAZERS_MATEPAIRS macro
57 #ifdef RAZERS_MATEPAIRS
187 #ifdef RAZERS_MATEPAIRS in mapReads()
265 #ifdef RAZERS_MATEPAIRS in main()
289 #ifdef RAZERS_MATEPAIRS in main()
301 #ifdef RAZERS_MATEPAIRS in main()
384 #ifdef RAZERS_MATEPAIRS in main()
454 #ifdef RAZERS_MATEPAIRS in main()
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| H A D | razers.h | 251 #ifdef RAZERS_MATEPAIRS
705 #ifdef RAZERS_MATEPAIRS
733 #ifdef RAZERS_MATEPAIRS
751 #ifdef RAZERS_MATEPAIRS
860 #ifdef RAZERS_MATEPAIRS
891 #ifdef RAZERS_MATEPAIRS
1025 #ifdef RAZERS_MATEPAIRS
1639 #ifdef RAZERS_MATEPAIRS
1679 #ifdef RAZERS_MATEPAIRS
2140 #ifdef RAZERS_MATEPAIRS
[all …]
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| H A D | razers_matepairs.h | 534 #ifdef RAZERS_MATEPAIRS
696 #ifdef RAZERS_MATEPAIRS
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| H A D | outputFormat.h | 848 #ifdef RAZERS_MATEPAIRS in dumpMatches()
880 #ifdef RAZERS_MATEPAIRS in dumpMatches()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers.cpp | 30 #define RAZERS_MATEPAIRS // enable paired-end matching macro
37 #define RAZERS_MATEPAIRS macro
54 #ifdef RAZERS_MATEPAIRS
166 #ifdef RAZERS_MATEPAIRS in mapReads()
253 #ifdef RAZERS_MATEPAIRS in setUpArgumentParser()
283 #ifdef RAZERS_MATEPAIRS in setUpArgumentParser()
449 #ifdef RAZERS_MATEPAIRS in extractOptions()
502 #ifdef RAZERS_MATEPAIRS in extractOptions()
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| H A D | razers.h | 260 #ifdef RAZERS_MATEPAIRS
651 #ifdef RAZERS_MATEPAIRS
680 #ifdef RAZERS_MATEPAIRS
717 #ifdef RAZERS_MATEPAIRS
736 #ifdef RAZERS_MATEPAIRS
751 #ifdef RAZERS_MATEPAIRS
768 #ifdef RAZERS_MATEPAIRS
775 #ifdef RAZERS_MATEPAIRS
873 #ifdef RAZERS_MATEPAIRS
905 #ifdef RAZERS_MATEPAIRS
[all …]
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| H A D | razers_matepairs.h | 230 #ifdef RAZERS_MATEPAIRS
407 #ifdef RAZERS_MATEPAIRS
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| H A D | outputFormat.h | 750 #ifdef RAZERS_MATEPAIRS in dumpMatches()
782 #ifdef RAZERS_MATEPAIRS in dumpMatches()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/ |
| H A D | razers.cpp | 43 #define RAZERS_MATEPAIRS // enable paired-end matching macro
82 #ifdef RAZERS_MATEPAIRS
182 #ifdef RAZERS_MATEPAIRS in mapReads()
317 #ifdef RAZERS_MATEPAIRS in setUpArgumentParser()
355 #ifdef RAZERS_MATEPAIRS in setUpArgumentParser()
554 #ifdef RAZERS_MATEPAIRS in extractOptions()
615 #ifdef RAZERS_MATEPAIRS in extractOptions()
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| H A D | razers.h | 3338 #ifdef RAZERS_MATEPAIRS
3349 #ifdef RAZERS_MATEPAIRS
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | splazers.cpp | 31 #define RAZERS_MATEPAIRS // enable paired-end matching macro
39 #define RAZERS_MATEPAIRS macro
58 #ifdef RAZERS_MATEPAIRS
177 #ifdef RAZERS_MATEPAIRS in mapReads()
303 #ifdef RAZERS_MATEPAIRS in main()
539 #ifdef RAZERS_MATEPAIRS in main()
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| H A D | razers.h | 271 #ifdef RAZERS_MATEPAIRS
693 #ifdef RAZERS_MATEPAIRS
721 #ifdef RAZERS_MATEPAIRS
739 #ifdef RAZERS_MATEPAIRS
851 #ifdef RAZERS_MATEPAIRS
882 #ifdef RAZERS_MATEPAIRS
1016 #ifdef RAZERS_MATEPAIRS
1630 #ifdef RAZERS_MATEPAIRS
1670 #ifdef RAZERS_MATEPAIRS
2120 #ifdef RAZERS_MATEPAIRS
[all …]
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| H A D | razers_matepairs.h | 522 #ifdef RAZERS_MATEPAIRS
684 #ifdef RAZERS_MATEPAIRS
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| H A D | outputFormat.h | 928 #ifdef RAZERS_MATEPAIRS in dumpMatches()
960 #ifdef RAZERS_MATEPAIRS in dumpMatches()
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