| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_dp_formula.h | 313 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
322 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
334 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
343 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
355 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
364 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
991 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
1019 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
3027 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
3056 … scoringScheme, RecursionDirectionLowerDiagonal(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
[all …]
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/ |
| H A D | align_extend_base.h | 136 RecursionDirectionLowerDiagonal
164 RecursionDirectionLowerDiagonal
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/ |
| H A D | align_extend_base.h | 136 RecursionDirectionLowerDiagonal
164 RecursionDirectionLowerDiagonal
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/ |
| H A D | align_extend_base.h | 136 RecursionDirectionLowerDiagonal
164 RecursionDirectionLowerDiagonal
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_profile.h | 121 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
143 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_profile.h | 121 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
143 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_profile.h | 119 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
140 typedef RecursionDirectionLowerDiagonal TRecursionTypeLastCell_;
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_formula_linear.h | 107 RecursionDirectionLowerDiagonal const &) in _computeTraceLinear()
231 RecursionDirectionLowerDiagonal const &, in _doComputeScore()
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| H A D | dp_meta_info.h | 245 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
294 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
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| H A D | dp_formula.h | 92 typedef Tag<RecursionDirectionLowerDiagonal_> RecursionDirectionLowerDiagonal; typedef
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| H A D | dp_formula_affine.h | 114 RecursionDirectionLowerDiagonal const &) in _retrieveTraceAffine()
455 RecursionDirectionLowerDiagonal const &, in _doComputeScore()
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| H A D | dp_formula_dynamic.h | 331 RecursionDirectionLowerDiagonal const &, in _doComputeScore()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_meta_info.h | 245 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
294 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
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| H A D | dp_formula.h | 90 typedef Tag<RecursionDirectionLowerDiagonal_> RecursionDirectionLowerDiagonal; typedef
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| H A D | dp_formula_linear.h | 162 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| H A D | dp_formula_affine.h | 201 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| H A D | dp_formula_dynamic.h | 528 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_meta_info.h | 245 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
294 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
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| H A D | dp_formula.h | 90 typedef Tag<RecursionDirectionLowerDiagonal_> RecursionDirectionLowerDiagonal; typedef
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| H A D | dp_formula_linear.h | 162 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| H A D | dp_formula_affine.h | 201 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| H A D | dp_formula_dynamic.h | 528 RecursionDirectionLowerDiagonal const &, in _computeScore()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_split/ |
| H A D | align_split_interface.h | 189 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
212 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_split/ |
| H A D | align_split_interface.h | 227 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
252 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_split/ |
| H A D | align_split_interface.h | 227 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
252 RecursionDirectionLowerDiagonal>::Type TRecursionTypeLastCell_;
|