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Searched refs:RecursionDirectionVertical (Results 1 – 25 of 25) sorted by relevance

/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/
H A Dalign_extend_base.h101 DPInitialColumn>, RecursionDirectionVertical,
105 DPInitialColumn>, RecursionDirectionVertical,
131 DPInitialColumn>, RecursionDirectionVertical,
135 DPInitialColumn>, RecursionDirectionVertical,
159 DPInitialColumn>, RecursionDirectionVertical,
163 DPInitialColumn>, RecursionDirectionVertical,
187 DPInitialColumn>, RecursionDirectionVertical,
191 DPInitialColumn>, RecursionDirectionVertical,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/
H A Dalign_extend_base.h101 DPInitialColumn>, RecursionDirectionVertical,
105 DPInitialColumn>, RecursionDirectionVertical,
131 DPInitialColumn>, RecursionDirectionVertical,
135 DPInitialColumn>, RecursionDirectionVertical,
159 DPInitialColumn>, RecursionDirectionVertical,
163 DPInitialColumn>, RecursionDirectionVertical,
187 DPInitialColumn>, RecursionDirectionVertical,
191 DPInitialColumn>, RecursionDirectionVertical,
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/
H A Dalign_extend_base.h101 DPInitialColumn>, RecursionDirectionVertical,
105 DPInitialColumn>, RecursionDirectionVertical,
131 DPInitialColumn>, RecursionDirectionVertical,
135 DPInitialColumn>, RecursionDirectionVertical,
159 DPInitialColumn>, RecursionDirectionVertical,
163 DPInitialColumn>, RecursionDirectionVertical,
187 DPInitialColumn>, RecursionDirectionVertical,
191 DPInitialColumn>, RecursionDirectionVertical,
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Ddp_meta_info.h190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
H A Ddp_formula_affine.h155 RecursionDirectionVertical const &) in _retrieveTraceAffine()
286 RecursionDirectionVertical const &) in _internalComputeScore()
302 RecursionDirectionVertical const &) in _internalComputeScore()
320 RecursionDirectionVertical const &) in _internalComputeScore()
405 …eBitMap_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore()
466 …eBitMap_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore()
512 RecursionDirectionVertical const &, in _doComputeScore()
521 …p_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()) | Tra… in _doComputeScore()
H A Ddp_formula_dynamic.h170 RecursionDirectionVertical const &) in _internalComputeScore()
185 RecursionDirectionVertical const &) in _internalComputeScore()
279 TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore()
339 TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore()
383 RecursionDirectionVertical const & tag, in _doComputeScore()
H A Ddp_formula.h71 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
H A Ddp_formula_linear.h281 RecursionDirectionVertical const &, in _doComputeScore()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A Ddp_meta_info.h190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
H A Ddp_formula_dynamic.h251 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
266 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
281 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
299 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
448 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore()
536 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore()
628 RecursionDirectionVertical const & tag, in _computeScore()
H A Ddp_formula.h69 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
H A Ddp_formula_linear.h236 RecursionDirectionVertical const &, in _computeScore()
H A Ddp_formula_affine.h298 RecursionDirectionVertical const &, in _computeScore()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A Ddp_meta_info.h190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
H A Ddp_formula_dynamic.h251 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
266 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
281 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
299 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF()
448 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore()
536 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore()
628 RecursionDirectionVertical const & tag, in _computeScore()
H A Ddp_formula.h69 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
H A Ddp_formula_linear.h236 RecursionDirectionVertical const &, in _computeScore()
H A Ddp_formula_affine.h298 RecursionDirectionVertical const &, in _computeScore()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_split/
H A Dalign_split_interface.h158 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
161 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
185 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
188 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
208 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
211 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
231 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
234 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_split/
H A Dalign_split_interface.h194 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
197 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
223 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
226 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
248 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
251 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
273 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
276 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_split/
H A Dalign_split_interface.h194 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
197 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
223 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
226 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
248 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
251 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
273 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
276 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/
H A Dtest_alignment_dp_formula.h197 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
203 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
730 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
741 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
754 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
765 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
1643 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST()
1652 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
1661 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
2874 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h707 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h795 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h795 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()