/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/ |
H A D | align_extend_base.h | 101 DPInitialColumn>, RecursionDirectionVertical, 105 DPInitialColumn>, RecursionDirectionVertical, 131 DPInitialColumn>, RecursionDirectionVertical, 135 DPInitialColumn>, RecursionDirectionVertical, 159 DPInitialColumn>, RecursionDirectionVertical, 163 DPInitialColumn>, RecursionDirectionVertical, 187 DPInitialColumn>, RecursionDirectionVertical, 191 DPInitialColumn>, RecursionDirectionVertical,
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/ |
H A D | align_extend_base.h | 101 DPInitialColumn>, RecursionDirectionVertical, 105 DPInitialColumn>, RecursionDirectionVertical, 131 DPInitialColumn>, RecursionDirectionVertical, 135 DPInitialColumn>, RecursionDirectionVertical, 159 DPInitialColumn>, RecursionDirectionVertical, 163 DPInitialColumn>, RecursionDirectionVertical, 187 DPInitialColumn>, RecursionDirectionVertical, 191 DPInitialColumn>, RecursionDirectionVertical,
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/ |
H A D | align_extend_base.h | 101 DPInitialColumn>, RecursionDirectionVertical, 105 DPInitialColumn>, RecursionDirectionVertical, 131 DPInitialColumn>, RecursionDirectionVertical, 135 DPInitialColumn>, RecursionDirectionVertical, 159 DPInitialColumn>, RecursionDirectionVertical, 163 DPInitialColumn>, RecursionDirectionVertical, 187 DPInitialColumn>, RecursionDirectionVertical, 191 DPInitialColumn>, RecursionDirectionVertical,
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
H A D | dp_meta_info.h | 190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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H A D | dp_formula_affine.h | 155 RecursionDirectionVertical const &) in _retrieveTraceAffine() 286 RecursionDirectionVertical const &) in _internalComputeScore() 302 RecursionDirectionVertical const &) in _internalComputeScore() 320 RecursionDirectionVertical const &) in _internalComputeScore() 405 …eBitMap_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore() 466 …eBitMap_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore() 512 RecursionDirectionVertical const &, in _doComputeScore() 521 …p_::VERTICAL, TraceBitMap_::VERTICAL_OPEN, TTracebackConfig(), RecursionDirectionVertical()) | Tra… in _doComputeScore()
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H A D | dp_formula_dynamic.h | 170 RecursionDirectionVertical const &) in _internalComputeScore() 185 RecursionDirectionVertical const &) in _internalComputeScore() 279 TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore() 339 TTracebackConfig(), RecursionDirectionVertical()); in _doComputeScore() 383 RecursionDirectionVertical const & tag, in _doComputeScore()
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H A D | dp_formula.h | 71 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
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H A D | dp_formula_linear.h | 281 RecursionDirectionVertical const &, in _doComputeScore()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
H A D | dp_meta_info.h | 190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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H A D | dp_formula_dynamic.h | 251 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 266 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 281 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 299 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 448 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore() 536 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore() 628 RecursionDirectionVertical const & tag, in _computeScore()
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H A D | dp_formula.h | 69 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
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H A D | dp_formula_linear.h | 236 RecursionDirectionVertical const &, in _computeScore()
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H A D | dp_formula_affine.h | 298 RecursionDirectionVertical const &, in _computeScore()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
H A D | dp_meta_info.h | 190 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 193 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 241 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 244 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 290 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 293 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 339 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 342 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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H A D | dp_formula_dynamic.h | 251 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 266 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 281 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 299 RecursionDirectionVertical const &) in SEQAN_FUNC_ENABLE_IF() 448 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore() 536 TTracebackConfig(), RecursionDirectionVertical()); in _computeScore() 628 RecursionDirectionVertical const & tag, in _computeScore()
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H A D | dp_formula.h | 69 typedef Tag<RecursionDirectionVertical_> RecursionDirectionVertical; typedef
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H A D | dp_formula_linear.h | 236 RecursionDirectionVertical const &, in _computeScore()
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H A D | dp_formula_affine.h | 298 RecursionDirectionVertical const &, in _computeScore()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_split/ |
H A D | align_split_interface.h | 158 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 161 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 185 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 188 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 208 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 211 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 231 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 234 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_split/ |
H A D | align_split_interface.h | 194 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 197 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 223 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 226 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 248 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 251 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 273 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 276 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_split/ |
H A D | align_split_interface.h | 194 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 197 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 223 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 226 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 248 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 251 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 273 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type, 276 …sFreeEndGap_<TDPProfile, DPFirstColumn>, RecursionDirectionZero, RecursionDirectionVertical>::Type,
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
H A D | test_alignment_dp_formula.h | 197 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST() 203 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() 730 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST() 741 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() 754 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST() 765 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() 1643 … scoringScheme, RecursionDirectionVertical(), TDPProfileSingleTrace()); in SEQAN_DEFINE_TEST() 1652 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() 1661 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() 2874 … scoringScheme, RecursionDirectionVertical(), TDPProfileCompleteTrace()); in SEQAN_DEFINE_TEST() [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 707 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 795 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 795 RecursionDirectionVertical(), TDPProfile()); in _initiaizeBeginningOfBandedChain()
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