| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/ |
| H A D | local_blastdb_adapter.cpp | 135 m_SeqDB->RetSequence(&buffer); in GetSequence()
147 m_SeqDB->RetSequence(&buffer); in GetSequence()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/ |
| H A D | local_blastdb_adapter.cpp | 135 m_SeqDB->RetSequence(&buffer); in GetSequence()
147 m_SeqDB->RetSequence(&buffer); in GetSequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/splign/ |
| H A D | compart_matching.hpp | 96 virtual void RetSequence(const char ** /*buffer*/) {} in RetSequence() function in ISequenceSource
131 virtual void RetSequence(const char ** buffer) { m_seqdb->RetSequence(buffer); } in RetSequence() function in CBlastSequenceSource
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_reader/ |
| H A D | seqdb.hpp | 785 void RetSequence(const char ** buffer) const;
1594 m_DB->RetSequence(& m_Data); in ~CSeqDBSequence()
1637 m_DB->RetSequence(& m_Data); in x_RetSeq()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_reader/ |
| H A D | seqdb.hpp | 785 void RetSequence(const char ** buffer) const;
1594 m_DB->RetSequence(& m_Data); in ~CSeqDBSequence()
1637 m_DB->RetSequence(& m_Data); in x_RetSeq()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_writer/ |
| H A D | multisource_util.hpp | 154 m_SeqDB.RetSequence(& m_Buffer); in ~CSequenceReturn()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_writer/ |
| H A D | multisource_util.hpp | 154 m_SeqDB.RetSequence(& m_Buffer); in ~CSequenceReturn()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/demo/ |
| H A D | seqdb_demo.cpp | 102 nr.RetSequence(& buffer); in Run()
398 sm_sp->RetSequence(&buffer); in x_UseOID()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/demo/ |
| H A D | seqdb_demo.cpp | 102 nr.RetSequence(& buffer); in Run()
398 sm_sp->RetSequence(&buffer); in x_UseOID()
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| /dports/biology/diamond/diamond-2.0.13/src/data/blastdb/ |
| H A D | blastdb.cpp | 162 db_->RetSequence(&buf); in read_seq_data()
366 db_->RetSequence(&buf); in seq_data()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/splign/ |
| H A D | compart_matching.cpp | 411 subjdb->RetSequence(&pcb); in x_InitFilteringVector()
848 blastdb->RetSequence(&pcb); in x_CreateIndex()
1133 m_qsrc->RetSequence(&pcb); in x_CreateIndex()
1550 m_qsrc->RetSequence(&m_CurSeq_cDNA); in x_CompartVolume()
1593 m_qsrc->RetSequence(&m_CurSeq_cDNA); in x_CompartVolume()
1597 seqdb_genomic.RetSequence(&m_CurSeq_Genomic); in x_CompartVolume()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blastdb/ |
| H A D | makeblastdb.cpp | 568 m_Source->RetSequence(& m_Sequence); in ~CRawSeqDBSource()
602 m_Source->RetSequence(& m_Sequence); in ClearSequence()
660 m_Source->RetSequence(& m_Sequence); in GetNext()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastdb/ |
| H A D | makeblastdb.cpp | 568 m_Source->RetSequence(& m_Sequence); in ~CRawSeqDBSource()
602 m_Source->RetSequence(& m_Sequence); in ClearSequence()
660 m_Source->RetSequence(& m_Sequence); in GetNext()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbimpl.hpp | 405 void RetSequence(const char ** buffer) const;
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| H A D | seqdb.cpp | 518 void CSeqDB::RetSequence(const char ** buffer) const in RetSequence() function in CSeqDB
521 m_Impl->RetSequence(buffer); in RetSequence()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/test/ |
| H A D | seqdb_perf.cpp | 172 m_DbHandles[thread_id]->RetSequence(&buffer); in x_ScanDatabase()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/ |
| H A D | seqdbimpl.hpp | 405 void RetSequence(const char ** buffer) const;
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| H A D | seqdb.cpp | 518 void CSeqDB::RetSequence(const char ** buffer) const in RetSequence() function in CSeqDB
521 m_Impl->RetSequence(buffer); in RetSequence()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/test/ |
| H A D | seqdb_perf.cpp | 173 m_DbHandles[thread_id]->RetSequence(&buffer); in x_ScanDatabase()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_mt/ |
| H A D | blast_mt_unit_test.cpp | 382 m_SeqDB->RetSequence(&buf); in Main()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_mt/ |
| H A D | blast_mt_unit_test.cpp | 382 m_SeqDB->RetSequence(&buf); in Main()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/seqdb_reader/ |
| H A D | seqdb_unit_test.cpp | 794 seqp.RetSequence(& bufp); in BOOST_AUTO_TEST_CASE()
807 seqp.RetSequence(& bufp); in BOOST_AUTO_TEST_CASE()
2722 seqdb1.RetSequence(& s1); in BOOST_AUTO_TEST_CASE()
2724 seqdb2.RetSequence(& s2); in BOOST_AUTO_TEST_CASE()
2729 seqdb1.RetSequence(& s1); in BOOST_AUTO_TEST_CASE()
2731 seqdb2.RetSequence(& s2); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/seqdb_reader/ |
| H A D | seqdb_unit_test.cpp | 794 seqp.RetSequence(& bufp); in BOOST_AUTO_TEST_CASE()
807 seqp.RetSequence(& bufp); in BOOST_AUTO_TEST_CASE()
2722 seqdb1.RetSequence(& s1); in BOOST_AUTO_TEST_CASE()
2724 seqdb2.RetSequence(& s2); in BOOST_AUTO_TEST_CASE()
2729 seqdb1.RetSequence(& s1); in BOOST_AUTO_TEST_CASE()
2731 seqdb2.RetSequence(& s2); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | seqsrc_seqdb.cpp | 434 else seqdb.RetSequence((const char**)&args->seq->sequence); in s_SeqDbReleaseSequence()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | seqsrc_seqdb.cpp | 434 else seqdb.RetSequence((const char**)&args->seq->sequence); in s_SeqDbReleaseSequence()
|