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Searched refs:SAM_hdr_tag (Results 1 – 16 of 16) sorted by relevance

/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dsam_header.h113 } SAM_hdr_tag; typedef
133 SAM_hdr_tag *tag; // first tag
142 SAM_hdr_tag *tag;
149 SAM_hdr_tag *tag;
158 SAM_hdr_tag *tag;
375 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh,
378 SAM_hdr_tag **prev);
H A Dsam_header.c73 SAM_hdr_tag *tag; in sam_hdr_dump()
112 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
149 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
186 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
612 SAM_hdr_tag *tag; in sam_hdr_find()
644 SAM_hdr_tag *tag; in sam_hdr_find_line()
726 SAM_hdr_tag *tag, *prev; in sam_hdr_update()
775 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order()
816 SAM_hdr_tag *tag; in sam_hdr_rebuild()
837 SAM_hdr_tag *tag; in sam_hdr_rebuild()
[all …]
H A Dcram_io.c2768 SAM_hdr_tag *tag; in refs_from_header()
2894 SAM_hdr_tag *tag; in cram_populate_ref()
/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dsam_header.h109 } SAM_hdr_tag; typedef
129 SAM_hdr_tag *tag; // first tag
138 SAM_hdr_tag *tag;
145 SAM_hdr_tag *tag;
154 SAM_hdr_tag *tag;
370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh,
373 SAM_hdr_tag **prev);
H A Dsam_header.c66 SAM_hdr_tag *tag; in sam_hdr_dump()
103 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
145 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
187 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
440 SAM_hdr_tag *h_tag, *last; in sam_hdr_vadd()
613 SAM_hdr_tag *tag; in sam_hdr_find()
645 SAM_hdr_tag *tag; in sam_hdr_find_line()
769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order()
802 SAM_hdr_tag *tag; in sam_hdr_rebuild()
826 SAM_hdr_tag *tag; in sam_hdr_rebuild()
[all …]
H A Dcram_io.c1857 SAM_hdr_tag *tag; in refs_from_header()
2028 SAM_hdr_tag *tag; in cram_populate_ref()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dsam_header.h109 } SAM_hdr_tag; typedef
129 SAM_hdr_tag *tag; // first tag
138 SAM_hdr_tag *tag;
145 SAM_hdr_tag *tag;
154 SAM_hdr_tag *tag;
370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh,
373 SAM_hdr_tag **prev);
H A Dsam_header.c66 SAM_hdr_tag *tag; in sam_hdr_dump()
103 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
145 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
187 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
440 SAM_hdr_tag *h_tag, *last; in sam_hdr_vadd()
613 SAM_hdr_tag *tag; in sam_hdr_find()
645 SAM_hdr_tag *tag; in sam_hdr_find_line()
769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order()
802 SAM_hdr_tag *tag; in sam_hdr_rebuild()
826 SAM_hdr_tag *tag; in sam_hdr_rebuild()
[all …]
H A Dcram_io.c1857 SAM_hdr_tag *tag; in refs_from_header()
2047 SAM_hdr_tag *tag; in cram_populate_ref()
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dsam_header.h109 } SAM_hdr_tag; typedef
129 SAM_hdr_tag *tag; // first tag
138 SAM_hdr_tag *tag;
145 SAM_hdr_tag *tag;
154 SAM_hdr_tag *tag;
370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh,
373 SAM_hdr_tag **prev);
H A Dsam_header.c66 SAM_hdr_tag *tag; in sam_hdr_dump()
103 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
145 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
187 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
613 SAM_hdr_tag *tag; in sam_hdr_find()
645 SAM_hdr_tag *tag; in sam_hdr_find_line()
718 SAM_hdr_tag *tag, *prev; in sam_hdr_update()
769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order()
802 SAM_hdr_tag *tag; in sam_hdr_rebuild()
826 SAM_hdr_tag *tag; in sam_hdr_rebuild()
[all …]
H A Dcram_io.c1852 SAM_hdr_tag *tag; in refs_from_header()
2023 SAM_hdr_tag *tag; in cram_populate_ref()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dsam_header.h109 } SAM_hdr_tag; typedef
129 SAM_hdr_tag *tag; // first tag
138 SAM_hdr_tag *tag;
145 SAM_hdr_tag *tag;
154 SAM_hdr_tag *tag;
370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh,
373 SAM_hdr_tag **prev);
H A Dsam_header.c65 SAM_hdr_tag *tag; in sam_hdr_dump()
102 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
144 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
186 SAM_hdr_tag *tag; in sam_hdr_update_hashes()
612 SAM_hdr_tag *tag; in sam_hdr_find()
644 SAM_hdr_tag *tag; in sam_hdr_find_line()
717 SAM_hdr_tag *tag, *prev; in sam_hdr_update()
768 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order()
802 SAM_hdr_tag *tag; in sam_hdr_rebuild()
826 SAM_hdr_tag *tag; in sam_hdr_rebuild()
[all …]
H A Dcram_io.c1850 SAM_hdr_tag *tag; in refs_from_header()
2021 SAM_hdr_tag *tag; in cram_populate_ref()
/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/
H A Dsam_to_cram.c155 SAM_hdr_tag *tag; in main()