Searched refs:SAM_hdr_tag (Results 1 – 16 of 16) sorted by relevance
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | sam_header.h | 113 } SAM_hdr_tag; typedef 133 SAM_hdr_tag *tag; // first tag 142 SAM_hdr_tag *tag; 149 SAM_hdr_tag *tag; 158 SAM_hdr_tag *tag; 375 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh, 378 SAM_hdr_tag **prev);
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H A D | sam_header.c | 73 SAM_hdr_tag *tag; in sam_hdr_dump() 112 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 149 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 186 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 612 SAM_hdr_tag *tag; in sam_hdr_find() 644 SAM_hdr_tag *tag; in sam_hdr_find_line() 726 SAM_hdr_tag *tag, *prev; in sam_hdr_update() 775 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order() 816 SAM_hdr_tag *tag; in sam_hdr_rebuild() 837 SAM_hdr_tag *tag; in sam_hdr_rebuild() [all …]
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H A D | cram_io.c | 2768 SAM_hdr_tag *tag; in refs_from_header() 2894 SAM_hdr_tag *tag; in cram_populate_ref()
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/dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
H A D | sam_header.h | 109 } SAM_hdr_tag; typedef 129 SAM_hdr_tag *tag; // first tag 138 SAM_hdr_tag *tag; 145 SAM_hdr_tag *tag; 154 SAM_hdr_tag *tag; 370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh, 373 SAM_hdr_tag **prev);
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H A D | sam_header.c | 66 SAM_hdr_tag *tag; in sam_hdr_dump() 103 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 145 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 187 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 440 SAM_hdr_tag *h_tag, *last; in sam_hdr_vadd() 613 SAM_hdr_tag *tag; in sam_hdr_find() 645 SAM_hdr_tag *tag; in sam_hdr_find_line() 769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order() 802 SAM_hdr_tag *tag; in sam_hdr_rebuild() 826 SAM_hdr_tag *tag; in sam_hdr_rebuild() [all …]
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H A D | cram_io.c | 1857 SAM_hdr_tag *tag; in refs_from_header() 2028 SAM_hdr_tag *tag; in cram_populate_ref()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
H A D | sam_header.h | 109 } SAM_hdr_tag; typedef 129 SAM_hdr_tag *tag; // first tag 138 SAM_hdr_tag *tag; 145 SAM_hdr_tag *tag; 154 SAM_hdr_tag *tag; 370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh, 373 SAM_hdr_tag **prev);
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H A D | sam_header.c | 66 SAM_hdr_tag *tag; in sam_hdr_dump() 103 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 145 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 187 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 440 SAM_hdr_tag *h_tag, *last; in sam_hdr_vadd() 613 SAM_hdr_tag *tag; in sam_hdr_find() 645 SAM_hdr_tag *tag; in sam_hdr_find_line() 769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order() 802 SAM_hdr_tag *tag; in sam_hdr_rebuild() 826 SAM_hdr_tag *tag; in sam_hdr_rebuild() [all …]
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H A D | cram_io.c | 1857 SAM_hdr_tag *tag; in refs_from_header() 2047 SAM_hdr_tag *tag; in cram_populate_ref()
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/dports/biology/stacks/stacks-2.4/htslib/cram/ |
H A D | sam_header.h | 109 } SAM_hdr_tag; typedef 129 SAM_hdr_tag *tag; // first tag 138 SAM_hdr_tag *tag; 145 SAM_hdr_tag *tag; 154 SAM_hdr_tag *tag; 370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh, 373 SAM_hdr_tag **prev);
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H A D | sam_header.c | 66 SAM_hdr_tag *tag; in sam_hdr_dump() 103 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 145 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 187 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 613 SAM_hdr_tag *tag; in sam_hdr_find() 645 SAM_hdr_tag *tag; in sam_hdr_find_line() 718 SAM_hdr_tag *tag, *prev; in sam_hdr_update() 769 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order() 802 SAM_hdr_tag *tag; in sam_hdr_rebuild() 826 SAM_hdr_tag *tag; in sam_hdr_rebuild() [all …]
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H A D | cram_io.c | 1852 SAM_hdr_tag *tag; in refs_from_header() 2023 SAM_hdr_tag *tag; in cram_populate_ref()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
H A D | sam_header.h | 109 } SAM_hdr_tag; typedef 129 SAM_hdr_tag *tag; // first tag 138 SAM_hdr_tag *tag; 145 SAM_hdr_tag *tag; 154 SAM_hdr_tag *tag; 370 SAM_hdr_tag *sam_hdr_find_key(SAM_hdr *sh, 373 SAM_hdr_tag **prev);
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H A D | sam_header.c | 65 SAM_hdr_tag *tag; in sam_hdr_dump() 102 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 144 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 186 SAM_hdr_tag *tag; in sam_hdr_update_hashes() 612 SAM_hdr_tag *tag; in sam_hdr_find() 644 SAM_hdr_tag *tag; in sam_hdr_find_line() 717 SAM_hdr_tag *tag, *prev; in sam_hdr_update() 768 SAM_hdr_tag *tag; in sam_hdr_parse_sort_order() 802 SAM_hdr_tag *tag; in sam_hdr_rebuild() 826 SAM_hdr_tag *tag; in sam_hdr_rebuild() [all …]
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H A D | cram_io.c | 1850 SAM_hdr_tag *tag; in refs_from_header() 2021 SAM_hdr_tag *tag; in cram_populate_ref()
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/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/ |
H A D | sam_to_cram.c | 155 SAM_hdr_tag *tag; in main()
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