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Searched refs:STD_ARRAY_REF (Results 1 – 15 of 15) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/include/
H A Dpgenlib_misc.h227 void GenoarrCountFreqsUnsafe(const uintptr_t* genoarr, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, …
233 …_include_interleaved_vec, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
237 …_restrict sample_include, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
239 …_restrict sample_exclude, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
241 …subset1, const uintptr_t* __restrict subset2, uint32_t raw_sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
H A Dpgenlib_read.h552 …etIndex pssi, uint32_t sample_ct, uint32_t vidx, PgenReader* pgr_ptr, STD_ARRAY_REF(uint32_t, 4) g…
558 …t sample_ct, uint32_t vidx, uint32_t allele_idx, PgenReader* pgr_ptr, STD_ARRAY_REF(uint32_t, 4) g…
654 …dx, uint32_t is_minimac3_r2, PgenReader* pgr_ptr, double* imp_r2_ptr, STD_ARRAY_REF(uint32_t, 4) g…
656 …pgr_ptr, double* __restrict imp_r2_ptr, uint32_t* __restrict het_ctp, STD_ARRAY_REF(uint32_t, 4) g…
H A Dpgenlib_misc.cc704 void GenoarrCountFreqsUnsafe(const uintptr_t* genoarr, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, …
828 …_include_interleaved_vec, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
937 …_restrict sample_include, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
982 …_restrict sample_exclude, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
1031 …subset1, const uintptr_t* __restrict subset2, uint32_t raw_sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
1089 …ids, uint32_t common_geno, uint32_t difflist_len, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
H A Dpgenlib_read.cc65 void GenoarrbCountFreqs(const unsigned char* genoarrb, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, …
109 …_include_interleaved_vec, uint32_t raw_sample_ct, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) g…
256 void GenoarrCountFreqs(const uintptr_t* genoarr, uint32_t sample_ct, STD_ARRAY_REF(uint32_t, 4) gen…
2887 …base_genovec, uint32_t raw_sample_ct, const unsigned char** fread_pp, STD_ARRAY_REF(uint32_t, 4) g…
3045 …_t raw_sample_ct, uint32_t sample_ct, const unsigned char** fread_pp, STD_ARRAY_REF(uint32_t, 4) g…
3108 …_t raw_sample_ct, uint32_t sample_ct, const unsigned char** fread_pp, STD_ARRAY_REF(uint32_t, 4) g…
3220 …_ct, uint32_t vidx, PgenReaderMain* pgrp, uint32_t* unphased_het_ctp, STD_ARRAY_REF(uint32_t, 4) g…
3336 …etIndex pssi, uint32_t sample_ct, uint32_t vidx, PgenReader* pgr_ptr, STD_ARRAY_REF(uint32_t, 4) g…
4321 …t sample_ct, uint32_t vidx, uint32_t allele_idx, PgenReader* pgr_ptr, STD_ARRAY_REF(uint32_t, 4) g…
7541 …_ct, uint32_t vidx, PgenReaderMain* pgrp, uint32_t* unphased_het_ctp, STD_ARRAY_REF(uint32_t, 4) g…
[all …]
H A Dpgenlib_write.cc850 STD_ARRAY_REF(uint32_t, 4) ldbase_genocounts = pwcp->ldbase_genocounts; in PwcAppendBiallelicGenovecMain()
1121 STD_ARRAY_REF(uint32_t, 4) ldbase_genocounts = pwcp->ldbase_genocounts; in PwcAppendBiallelicDifflistLimitedMain()
H A Dplink2_base.h1642 # define STD_ARRAY_REF(tt, nn) std::array<tt, nn>& macro
1672 # define STD_ARRAY_REF(tt, nn) tt* const macro
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_common.h1032 …t32_t* read_block_size_ptr, uintptr_t* max_alt_allele_block_size_ptr, STD_ARRAY_REF(unsigned char*…
H A Dplink2_data.cc1542 …pgvp, uint32_t raw_sample_ct, uint32_t sample_ct, uint32_t allele_ct, STD_ARRAY_REF(uint32_t, 4) g…
1597 …pgvp, uint32_t raw_sample_ct, uint32_t sample_ct, uint32_t allele_ct, STD_ARRAY_REF(uint32_t, 4) g…
2070 … STD_ARRAY_REF(uint32_t, 3) cur_x_male_geno_cts = x_male_geno_cts[variant_uidx - x_start]; in LoadAlleleAndGenoCountsThread()
2076 … STD_ARRAY_REF(uint32_t, 3) cur_nosex_geno_cts = x_nosex_geno_cts[variant_uidx - x_start]; in LoadAlleleAndGenoCountsThread()
2260 … STD_ARRAY_REF(uint32_t, 3) cur_x_male_geno_cts = x_male_geno_cts[variant_uidx - x_start]; in LoadAlleleAndGenoCountsThread()
2266 … STD_ARRAY_REF(uint32_t, 3) cur_nosex_geno_cts = x_nosex_geno_cts[variant_uidx - x_start]; in LoadAlleleAndGenoCountsThread()
2279 STD_ARRAY_REF(uint32_t, 3) cur_raw_geno_cts = raw_geno_cts[variant_uidx]; in LoadAlleleAndGenoCountsThread()
H A Dplink2_common.cc1249 STD_ARRAY_REF(uint32_t, kChrOffsetCt) xymt_codes = cip->xymt_codes; in FinalizeChrset()
2786 …t32_t* read_block_size_ptr, uintptr_t* max_alt_allele_block_size_ptr, STD_ARRAY_REF(unsigned char*…
H A Dplink2_cmdline.h1664 uint32_t CubicRealRoots(double coef_a, double coef_b, double coef_c, STD_ARRAY_REF(double, 3) solut…
H A Dplink2_import.cc781 …rmat_end, int32_t vcf_min_gq, int32_t vcf_min_dp, int32_t vcf_max_dp, STD_ARRAY_REF(uint32_t, 2) q…
798 …EF(int32_t, 2) qual_maxs, STD_ARRAY_REF(uint32_t, 2) qual_field_skips, STD_ARRAY_REF(int32_t, 2) q…
H A Dplink2_cmdline.cc2369 uint32_t CubicRealRoots(double coef_a, double coef_b, double coef_c, STD_ARRAY_REF(double, 3) solut…
H A Dplink2_filter.cc4207 STD_ARRAY_REF(AlleleCode, 2) cur_refalt1_select = refalt1_select[variant_uidx];
H A Dplink2_glm.cc3703 STD_ARRAY_REF(uint32_t, 6) cur_geno_hardcall_cts = block_aux_iter->geno_hardcall_cts; in GlmLogisticThread()
3704 …, cur_gcount_case_interleaved_vec, cur_sample_ct, cur_case_ct, R_CAST(STD_ARRAY_REF(uint32_t, 4), … in GlmLogisticThread()
3935 … STD_ARRAY_REF(uint32_t, 6) dst = block_aux_iter[nonomitted_allele_idx].geno_hardcall_cts; in GlmLogisticThread()
H A Dplink2_export.cc144 STD_ARRAY_REF(AlleleCode, 2) cur_export_allele = export_allele[variant_uidx];