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Searched refs:SUFFIX_EL (Results 1 – 10 of 10) sorted by relevance

/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/test/java/uk/ac/cam/ch/wwmm/opsin/
H A DComponentGeneration_AmbiguitiesAndIrregularitiesTest.java120 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetra_Phen1()
134 Element yl = new TokenEl(SUFFIX_EL, "oxy"); in testTetraphenShouldBeTetra_Phen2()
149 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen1()
169 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen2()
190 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen3()
H A DComponentGeneration_StereochemistryTest.java546 Element suffix = new TokenEl(SUFFIX_EL, "ylidene"); in testEandZUnbrackettedBeforeYlidene()
562 assertEquals(SUFFIX_EL ,children.get(2).getName()); in testEandZUnbrackettedBeforeYlidene()
/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/
H A DComponentGenerator.java485 if(suffix.getName().equals(SUFFIX_EL)){ in orthoMetaParaLocantIsTwoLocants()
589 boolean suffixPresent = subOrRoot.getChildElements(SUFFIX_EL).size() > 0; in processAlkaneStemModifications()
611 boolean suffixPresent = subOrRoot.getChildElements(SUFFIX_EL).size() > 0; in processAlkaneStemModifications()
654 Element suffix = OpsinTools.getNextSibling(multipliedElem, SUFFIX_EL); in processHeterogenousHydrides()
1120 if (name.equals(UNSATURATOR_EL) || name.equals(SUFFIX_EL)) { in duplicateLocantFromStereoTermIfAdjacentToEneOrYlidene()
1151 if (suffix==null || ! suffix.getName().equals(SUFFIX_EL)){ in processSuffixPrefixes()
1172 if (suffix ==null || !suffix.getName().equals(SUFFIX_EL)){ in processInfixes()
1633 List<Element> suffixes = subOrRoot.getChildElements(SUFFIX_EL); in handleSuffixIrregularities()
2446 List<Element> suffixes = next.getChildElements(SUFFIX_EL); in handleGroupIrregularities()
2468 Element suffix = OpsinTools.getNextSibling(possibleAcid, SUFFIX_EL); in handleGroupIrregularities()
[all …]
H A DComponentProcessor.java648 Element possibleSuffix = OpsinTools.getNextSibling(group, SUFFIX_EL); in applyTraditionalAlkaneNumberingIfAppropriate()
1438 if (elName.equals(SUFFIX_EL)){ in processCarbohydrates()
1498 if (possibleYl != null && possibleYl.getName().equals(SUFFIX_EL)){ in applyUnspecifiedRingSizeCyclisationIfPresent()
1505 if (possibleYl != null && possibleYl.getName().equals(SUFFIX_EL) && in applyUnspecifiedRingSizeCyclisationIfPresent()
1920 nextName.equals(SUFFIX_EL) || in processMultipliers()
1987 if (possibleSuffix.getName().equals(SUFFIX_EL)){ in detectConjunctiveSuffixGroups()
2157 refName.equals(SUFFIX_EL) ||
2296 Element newSuffix = new TokenEl(SUFFIX_EL);
3169 if (currentEl.getName().equals(SUFFIX_EL)) { in determineElementsToResolveIntoRingAssembly()
3653 else if (elName.equals(SUFFIX_EL)){ in resolveFeaturesOntoGroup()
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H A DFunctionalReplacement.java240 Element suffix = OpsinTools.getNextSibling(previousGroup, SUFFIX_EL); in isChalcogenSubstituent()
285 …etPreviousSiblingIgnoringCertainElements(suffix, new String[]{MULTIPLIER_EL, INFIX_EL, SUFFIX_EL}); in processInfixFunctionalReplacementNomenclature()
1065 List<Element> suffixElements =OpsinTools.getNextSiblingsOfType(groupToBeModified, SUFFIX_EL); in findFunctionalOxygenAtomsInApplicableSuffixes()
1122 List<Element> suffixElements =OpsinTools.getNextSiblingsOfType(groupToBeModified, SUFFIX_EL); in findOxygenAtomsInApplicableSuffixes()
H A DWordRules.java537 if (elName.equals(SUFFIX_EL)) { in endsWithGroupPredicateSatisfied()
555 while (lastEl != null && elName.equals(SUFFIX_EL)) { in endsWithGroupPredicateSatisfied()
561 lastEl = OpsinTools.getPreviousSibling(lastEl, SUFFIX_EL); in endsWithGroupPredicateSatisfied()
H A DXmlDeclarations.java173 static final String SUFFIX_EL ="suffix"; field in XmlDeclarations
H A DOpsinTools.java48 …if (next.getName().equals(SUFFIX_EL) && !CHARGE_TYPE_VAL.equals(next.getAttributeValue(TYPE_ATR))){ in getNextNonChargeSuffix()
H A DFusedRingBuilder.java1001 List<Element> suffixes = benzoEl.getParent().getChildElements(SUFFIX_EL); in locantsCouldApplyToHeteroatomPositions()
H A DStructureBuildingMethods.java673 for (Element suffix : group.getParent().getChildElements(SUFFIX_EL)) { in acdNameSpiroIndicatedHydrogenBug()