Searched refs:SUFFIX_EL (Results 1 – 10 of 10) sorted by relevance
/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/test/java/uk/ac/cam/ch/wwmm/opsin/ |
H A D | ComponentGeneration_AmbiguitiesAndIrregularitiesTest.java | 120 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetra_Phen1() 134 Element yl = new TokenEl(SUFFIX_EL, "oxy"); in testTetraphenShouldBeTetra_Phen2() 149 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen1() 169 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen2() 190 Element yl = new TokenEl(SUFFIX_EL, "yl"); in testTetraphenShouldBeTetraphen3()
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H A D | ComponentGeneration_StereochemistryTest.java | 546 Element suffix = new TokenEl(SUFFIX_EL, "ylidene"); in testEandZUnbrackettedBeforeYlidene() 562 assertEquals(SUFFIX_EL ,children.get(2).getName()); in testEandZUnbrackettedBeforeYlidene()
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/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/ |
H A D | ComponentGenerator.java | 485 if(suffix.getName().equals(SUFFIX_EL)){ in orthoMetaParaLocantIsTwoLocants() 589 boolean suffixPresent = subOrRoot.getChildElements(SUFFIX_EL).size() > 0; in processAlkaneStemModifications() 611 boolean suffixPresent = subOrRoot.getChildElements(SUFFIX_EL).size() > 0; in processAlkaneStemModifications() 654 Element suffix = OpsinTools.getNextSibling(multipliedElem, SUFFIX_EL); in processHeterogenousHydrides() 1120 if (name.equals(UNSATURATOR_EL) || name.equals(SUFFIX_EL)) { in duplicateLocantFromStereoTermIfAdjacentToEneOrYlidene() 1151 if (suffix==null || ! suffix.getName().equals(SUFFIX_EL)){ in processSuffixPrefixes() 1172 if (suffix ==null || !suffix.getName().equals(SUFFIX_EL)){ in processInfixes() 1633 List<Element> suffixes = subOrRoot.getChildElements(SUFFIX_EL); in handleSuffixIrregularities() 2446 List<Element> suffixes = next.getChildElements(SUFFIX_EL); in handleGroupIrregularities() 2468 Element suffix = OpsinTools.getNextSibling(possibleAcid, SUFFIX_EL); in handleGroupIrregularities() [all …]
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H A D | ComponentProcessor.java | 648 Element possibleSuffix = OpsinTools.getNextSibling(group, SUFFIX_EL); in applyTraditionalAlkaneNumberingIfAppropriate() 1438 if (elName.equals(SUFFIX_EL)){ in processCarbohydrates() 1498 if (possibleYl != null && possibleYl.getName().equals(SUFFIX_EL)){ in applyUnspecifiedRingSizeCyclisationIfPresent() 1505 if (possibleYl != null && possibleYl.getName().equals(SUFFIX_EL) && in applyUnspecifiedRingSizeCyclisationIfPresent() 1920 nextName.equals(SUFFIX_EL) || in processMultipliers() 1987 if (possibleSuffix.getName().equals(SUFFIX_EL)){ in detectConjunctiveSuffixGroups() 2157 refName.equals(SUFFIX_EL) || 2296 Element newSuffix = new TokenEl(SUFFIX_EL); 3169 if (currentEl.getName().equals(SUFFIX_EL)) { in determineElementsToResolveIntoRingAssembly() 3653 else if (elName.equals(SUFFIX_EL)){ in resolveFeaturesOntoGroup() [all …]
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H A D | FunctionalReplacement.java | 240 Element suffix = OpsinTools.getNextSibling(previousGroup, SUFFIX_EL); in isChalcogenSubstituent() 285 …etPreviousSiblingIgnoringCertainElements(suffix, new String[]{MULTIPLIER_EL, INFIX_EL, SUFFIX_EL}); in processInfixFunctionalReplacementNomenclature() 1065 List<Element> suffixElements =OpsinTools.getNextSiblingsOfType(groupToBeModified, SUFFIX_EL); in findFunctionalOxygenAtomsInApplicableSuffixes() 1122 List<Element> suffixElements =OpsinTools.getNextSiblingsOfType(groupToBeModified, SUFFIX_EL); in findOxygenAtomsInApplicableSuffixes()
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H A D | WordRules.java | 537 if (elName.equals(SUFFIX_EL)) { in endsWithGroupPredicateSatisfied() 555 while (lastEl != null && elName.equals(SUFFIX_EL)) { in endsWithGroupPredicateSatisfied() 561 lastEl = OpsinTools.getPreviousSibling(lastEl, SUFFIX_EL); in endsWithGroupPredicateSatisfied()
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H A D | XmlDeclarations.java | 173 static final String SUFFIX_EL ="suffix"; field in XmlDeclarations
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H A D | OpsinTools.java | 48 …if (next.getName().equals(SUFFIX_EL) && !CHARGE_TYPE_VAL.equals(next.getAttributeValue(TYPE_ATR))){ in getNextNonChargeSuffix()
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H A D | FusedRingBuilder.java | 1001 List<Element> suffixes = benzoEl.getParent().getChildElements(SUFFIX_EL); in locantsCouldApplyToHeteroatomPositions()
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H A D | StructureBuildingMethods.java | 673 for (Element suffix : group.getParent().getChildElements(SUFFIX_EL)) { in acdNameSpiroIndicatedHydrogenBug()
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