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Searched refs:SUMA_SurfaceObject (Results 1 – 25 of 107) sorted by relevance

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/dports/science/afni/afni-AFNI_21.3.16/src/SUMA/
H A DSUMA_GeomComp.h242 int SUMA_Taubin_Smooth_SO( SUMA_SurfaceObject *SO,
246 int SUMA_NN_Smooth_SO( SUMA_SurfaceObject *SO,
260 SUMA_SurfaceObject *SOe,
273 SUMA_SurfaceObject *SOe,
279 SUMA_SurfaceObject *SOe,
293 double SUMA_Pattie_Volume (SUMA_SurfaceObject *SO1, SUMA_SurfaceObject *SO2,
300 SUMA_Boolean SUMA_ProjectSurfaceToSphere(SUMA_SurfaceObject *SO, SUMA_SurfaceObject *SOref, float r…
361 SUMA_SurfaceObject *SUMA_MergeSurfs(SUMA_SurfaceObject **SOv, int N_SOv);
368 int SUMA_OrientSOTriangles(SUMA_SurfaceObject *SO,
388 float *SUMA_SegmentDistortion (SUMA_SurfaceObject *SO1, SUMA_SurfaceObject *SO2);
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H A DSUMA_clippingPlanes.h4 extern SUMA_SurfaceObject* clipIdentificationPlane[6];
5 extern SUMA_SurfaceObject* axisObject;
25 void determineCornersOfSquare(SUMA_SurfaceObject *SO);
27 int colorPlanes(SUMA_SurfaceViewer *sv, SUMA_SurfaceObject *SO,
31 void makeCommonNodesOfRectangleDarkRed(SUMA_SurfaceObject *SO);
37 void makeCommonNodesOfRectangleRed(SUMA_SurfaceObject *SO);
38 void makeCommonNodesOfRectangleGreen(SUMA_SurfaceObject *SO);
39 void makeCommonNodesOfRectangleBlue(SUMA_SurfaceObject *SO);
40 void makeCommonNodesOfRectangleCyan(SUMA_SurfaceObject *SO);
42 void makeCommonNodesOfRectangleYellow(SUMA_SurfaceObject *SO);
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H A DSUMA_Surface_IO.h37 SUMA_Boolean SUMA_OBJ_Read_SO(char *fname, SUMA_SurfaceObject *SO,
39 SUMA_SurfaceObject *SUMA_OBJ_2_SO(SUMA_OBJ_STRUCT *obj);
43 SUMA_SurfaceObject *SUMA_Load_Surface_Object_Wrapper (
59 SUMA_Boolean SUMA_Ply_Read (char * f_name, SUMA_SurfaceObject *SO);
60 SUMA_Boolean SUMA_Ply_Write (char * f_name, SUMA_SurfaceObject *SO);
61 SUMA_Boolean SUMA_STL_Read (char * f_name, SUMA_SurfaceObject *SO);
62 SUMA_Boolean SUMA_STL_Write (char * f_name, SUMA_SurfaceObject *SO);
63 SUMA_Boolean SUMA_Mnc_Read (char * f_name, SUMA_SurfaceObject *SO);
108 …lean SUMA_FreeSurfer_WritePatch (char *fileNm, SUMA_SurfaceObject *SO, char *firstLine, SUMA_Surfa…
113 SUMA_SurfaceObject *SUMA_nimlSO2SO(NI_group *ngr);
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H A DSUMA_Load_Surface_Object.h15 SUMA_SurfaceObject * SUMA_Load_Spec_Surf(
17 SUMA_SurfaceObject * SUMA_Load_Spec_Surf_with_Metrics(
20 SUMA_Boolean SUMA_PrepSO_GeomProp_GL(SUMA_SurfaceObject *SO);
25 SUMA_Boolean SUMA_AutoLoad_SO_Dsets(SUMA_SurfaceObject *SO);
47 SUMA_Boolean SUMA_Load_SO_NodeMarker(SUMA_SurfaceObject *SO,
51 SUMA_Boolean SUMA_SurfaceMetrics (SUMA_SurfaceObject *SO,
52 const char *Metrics, SUMA_SurfaceObject *SOinh);
54 const char *Metrics, SUMA_SurfaceObject *SOinh,
63 SUMA_SO_SIDE SUMA_GuessSide(SUMA_SurfaceObject *SO);
64 int SUMA_SetSphereParams(SUMA_SurfaceObject *SO, float tol);
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H A DSUMA_LocalStat.h14 float *SUMA_CalculateNodeAreas(SUMA_SurfaceObject *SO, byte *mask);
18 SUMA_SurfaceObject *SO, SUMA_SURFCLUST_OPTIONS *Opt);
22 SUMA_SurfaceObject *SO, SUMA_SURFCLUST_OPTIONS *Opt );
34 SUMA_DSET *SUMA_SurfClust_list_2_DsetMask(SUMA_SurfaceObject *SO,
40 SUMA_SurfaceObject *SO, SUMA_DSET *din,
45 SUMA_SurfaceObject *SOf);
47 SUMA_SurfaceObject *SO, float **dists, SUMA_DSET *din,
50 SUMA_SurfaceObject *SO, float **dists, float *nv,
53 SUMA_SurfaceObject *SO, float **FirstNeighbDist,
62 char *SUMA_ClustCommandLineFromOpt(char *pname, SUMA_SurfaceObject *SO,
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H A DSUMA_DOmanip.h9 SUMA_SurfaceObject * SUMA_findanySOp(int *dov_id);
22 int SUMA_SurfNormDir (SUMA_SurfaceObject *SO);
61 SUMA_Boolean SUMA_Apply_VolReg_Trans (SUMA_SurfaceObject *SO);
83 SUMA_SurfaceObject * SUMA_find_named_SOp_inDOv(
87 SUMA_SurfaceObject *SUMA_FindSOp_inDOv_from_N_Node(
100 SUMA_SurfaceObject *SUMA_Contralateral_SO(SUMA_SurfaceObject *SO,
107 SUMA_Boolean SUMA_ismappable (SUMA_SurfaceObject *SO);
108 SUMA_Boolean SUMA_isINHmappable (SUMA_SurfaceObject *SO);
116 SUMA_Boolean SUMA_isRelated_SO(SUMA_SurfaceObject *SO1,
136 int SUMA_isTypicalSOforVolSurf (SUMA_SurfaceObject *SO);
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H A DSUMA_niml.h10 NI_element * SUMA_makeNI_SurfIXYZ (SUMA_SurfaceObject *SO);
12 NI_element * SUMA_makeNI_SurfIJK (SUMA_SurfaceObject *SO);
13 NI_element * SUMA_makeNI_SurfINORM (SUMA_SurfaceObject *SO);
31 SUMA_Boolean SUMA_SendSumaNewSurface(SUMA_SurfaceObject *SO, SUMA_COMM_STRUCT *cs);
36 NI_element * SUMA_NodeVal2irgba_nel (SUMA_SurfaceObject *SO, float *val, char *instanceID, int clea…
37 NI_element * SUMA_Mesh_IJK2Mesh_IJK_nel (SUMA_SurfaceObject *SO, int *val, SUMA_Boolean cleanup, SU…
38 SUMA_Boolean SUMA_Mesh_IJK_nel2Mesh_IJK(SUMA_SurfaceObject *SO, NI_element *nel);
39 NI_element * SUMA_NodeXYZ2NodeXYZ_nel (SUMA_SurfaceObject *SO, float *val, SUMA_Boolean cleanup, SU…
40 SUMA_Boolean SUMA_NodeXYZ_nel2NodeXYZ (SUMA_SurfaceObject *SO, NI_element *nel);
43 NI_element *SUMA_SOVolPar2VolPar_nel (SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar, SUMA_DSET_TYPE d…
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H A DSUMA_CreateDO.h274 SUMA_SurfaceObject *SUMA_CreateChildSO(SUMA_SurfaceObject * SO,
308 void SUMA_SimpleDrawMesh(SUMA_SurfaceObject *SurfObj,
316 float *SUMA_VisX_CoordPointer(SUMA_SurfaceObject *SO);
324 SUMA_SurfaceObject *SO1, SUMA_SurfaceObject *SO2,
326 int SUMA_ComputeVisX(SUMA_SurfaceObject *SO1, SUMA_SurfaceObject *SO2,
329 char *SUMA_SO_GeometricType(SUMA_SurfaceObject *SO);
331 char *SUMA_SO_TopologicalType(SUMA_SurfaceObject *SO);
611 SUMA_SurfaceObject *SUMA_HJS_Surface(int ipart);
612 SUMA_SurfaceObject *SUMA_head_01_surface(void);
621 SUMA_Boolean SUMA_nixSODim(SUMA_SurfaceObject *SO);
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H A DSUMA_SphericalMapping.h53 SUMA_SurfaceObject * SUMA_morphToStd (SUMA_SurfaceObject *SO, SUMA_MorphInfo *MI, SUMA_Boolean node…
56 void SUMA_writeFSfile (SUMA_SurfaceObject *SO, char firstLine[], char fileNm[]);
65 SUMA_Boolean SUMA_inNodeNeighb( SUMA_SurfaceObject *surf, float *nodeList, int *node, float *P0, fl…
66 SUMA_SurfaceObject * SUMA_CreateIcosahedron (float r, int recDepth, float *ctr, char rec[], int ToS…
67 SUMA_MorphInfo * SUMA_MapSurface (SUMA_SurfaceObject *surf1, SUMA_SurfaceObject *surf2, int verb, c…
75 int SUMA_Bad_FacesetNorm_Dot_Radius(SUMA_SurfaceObject *SO, byte *FaceMask, double dot_cut, int *fa…
81 SUMA_Boolean SUMA_SphereQuality(SUMA_SurfaceObject *SO,
84 SUMA_Boolean SUMA_ProjectToSphere(SUMA_SurfaceObject *SO, float *ctr, float r);
86 SUMA_SphericalDeviations(SUMA_SurfaceObject *SO,
H A DSUMA_gts.h53 GtsSurface* SumaToGts( SUMA_SurfaceObject *SO); /*!< copies suma surface into a gts surface */
56 SUMA_SurfaceObject *SUMA_Mesh_Resample (SUMA_SurfaceObject *SO,
58 SUMA_SurfaceObject *SUMA_Mesh_Resample_nodes(SUMA_SurfaceObject *SO,
H A DSUMA_Engine.h16 SUMA_SurfaceObject *SOnxt);
21 SUMA_Boolean SUMA_GetOverlaysFromParent(SUMA_SurfaceObject *SO_nxt,
22 SUMA_SurfaceObject *SO_prec);
30 float * SUMA_XYZ_XYZmap (float *XYZ, SUMA_SurfaceObject *SO, SUMA_DO* dov,
32 float * SUMA_XYZmap_XYZ (float *XYZmap, SUMA_SurfaceObject *SO, SUMA_DO* dov,
41 SUMA_SurfaceObject *curSO);
H A DSUMA_BrainWrap.h17 SUMA_SurfaceObject **SOhull);
71 int SUMA_SkullMask (SUMA_SurfaceObject *SO,
73 int SUMA_StretchToFitLeCerveau (SUMA_SurfaceObject *SO,
83 int SUMA_PushToEdge(SUMA_SurfaceObject *SO,
86 int SUMA_PushToOuterSkull(SUMA_SurfaceObject *SO,
89 int SUMA_PushToInnerSkull(SUMA_SurfaceObject *SO,
92 int SUMA_Reposition_Touchup(SUMA_SurfaceObject *SO,
95 float *SUMA_Suggest_Touchup(SUMA_SurfaceObject *SO,
98 float *SUMA_Suggest_Touchup_Grad(SUMA_SurfaceObject *SO,
131 SUMA_SurfaceObject m_SOref; \
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H A DSUMA_Color.h49 SUMA_Boolean SUMA_Overlays_2_GLCOLAR4_SO(SUMA_SurfaceObject *SO,
72 SUMA_Boolean SUMA_iRGB_to_SO_OverlayPointer (SUMA_SurfaceObject *SO, char *Name,
80 SUMA_Boolean SUMA_CompactOverlaysOrder (SUMA_SurfaceObject *SO);
117 SUMA_Boolean SUMA_LoadDsetOntoSO_eng (char *filename, SUMA_SurfaceObject *SO,
173 SUMA_SurfaceObject *SUMA_SO_of_ColPlane(SUMA_OVERLAYS *Sover);
176 SUMA_Boolean SUMA_RemoveSO_CoordBias(SUMA_SurfaceObject *SO, SUMA_OVERLAYS *ovr);
178 SUMA_Boolean SUMA_TransferSO_CoordBias(SUMA_SurfaceObject *SO, SUMA_OVERLAYS
180 SUMA_Boolean SUMA_AddVisX_CoordBias(SUMA_SurfaceObject *SO, SUMA_OVERLAYS *ovr,
185 SUMA_Boolean SUMA_NewSurfaceGeometry(SUMA_SurfaceObject *SO);
189 SUMA_Boolean SUMA_OKassign(SUMA_DSET *dset, SUMA_SurfaceObject *SO);
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H A DSUMA_gts.c34 GtsSurface* SumaToGts( SUMA_SurfaceObject *SO) in SumaToGts()
135 SUMA_SurfaceObject* GtsToSuma( GtsSurface *gs)
139 SUMA_SurfaceObject* SO = NULL;
147 SO = (SUMA_SurfaceObject *)SUMA_malloc(sizeof(SUMA_SurfaceObject));
178 SUMA_SurfaceObject* SO = data[1];
203 SUMA_SurfaceObject* SO = data[1];
288 SUMA_SurfaceObject *SUMA_Mesh_Resample_nodes(SUMA_SurfaceObject *SO, in SUMA_Mesh_Resample_nodes()
309 SUMA_SurfaceObject *SUMA_Mesh_Resample (SUMA_SurfaceObject *SO, in SUMA_Mesh_Resample()
313 SUMA_SurfaceObject *S2=NULL; in SUMA_Mesh_Resample()
H A DSUMA_IsoSurface.h21 SUMA_SurfaceObject *SUMA_MarchingCubesSurface(
24 SUMA_SurfaceObject **SUMA_THD_ROI_IsoSurfaces(THD_3dim_dataset *in_volu, int isb,
28 SUMA_SurfaceObject *SUMA_THD_IsoSurface(THD_3dim_dataset *in_vol,
H A DSUMA_DOmanip.c1507 SUMA_SurfaceObject *SO; in SUMA_existSO()
1801 SUMA_SurfaceObject *SO; in SUMA_findSO_inDOv()
1873 SUMA_SurfaceObject *SO; in SUMA_findSOp_inDOv()
2003 SUMA_SurfaceObject *SO=NULL; in SUMA_is_ID_4_SO()
2028 SUMA_SurfaceObject *SO; in SUMA_BiggestLocalDomainParent()
2060 SUMA_SurfaceObject *SO; in SUMA_BiggestLocalDomainParent_Side()
2123 SUMA_SurfaceObject *SO; in SUMA_findanySOp_inDOv()
2242 SUMA_SurfaceObject *SO; in SUMA_find_SOLabel_from_idcode()
2284 SUMA_SurfaceObject *SO; in SUMA_find_SOidcode_from_label()
2857 SUMA_SurfaceObject *SUMA_Contralateral_SO(SUMA_SurfaceObject *SO, in SUMA_Contralateral_SO()
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H A DSUMA_clippingPlanes.c31 SUMA_SurfaceObject* clipIdentificationPlane[6];
32 SUMA_SurfaceObject* axisObject = NULL;
496 SUMA_SurfaceObject *soOld = (SUMA_SurfaceObject *)SUMAg_DOv[dov_ID].OP; in getObjectMinMaxForAxes()
531 SUMA_SurfaceObject *soOld = (SUMA_SurfaceObject *)SUMAg_DOv[dov_ID].OP; in dimensionsInscribeThoseOfPreviousSurfaceObjects()
553 void determineCornersOfSquare(SUMA_SurfaceObject *SO){ in determineCornersOfSquare()
641 void makeCommonNodesOfRectangleRed(SUMA_SurfaceObject *SO){ in makeCommonNodesOfRectangleRed()
665 void makeCommonNodesOfRectangleBlue(SUMA_SurfaceObject *SO){ in makeCommonNodesOfRectangleBlue()
725 SUMA_SurfaceObject *SO = (SUMA_SurfaceObject *)calloc(1, sizeof(SUMA_SurfaceObject)); in makeAxisPlaneFromNodeAndFaceSetList()
921 SUMA_SurfaceObject *SO = (SUMA_SurfaceObject *)calloc(1, sizeof(SUMA_SurfaceObject)); in drawPlaneFromNodeAndFaceSetList()
1115 void compareSurfaces(SUMA_SurfaceObject *SO1, SUMA_SurfaceObject *SO2){ in compareSurfaces()
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H A DSUMA_SVmanip.h42 SUMA_SurfaceObject *SO);
75 SUMA_SurfaceObject *SO);
140 SUMA_SurfaceObject *curSO);
142 SUMA_SurfaceObject *curSO);
144 SUMA_SurfaceObject *curSO);
148 SUMA_SurfaceObject *SUMA_SV_Focus_SO(SUMA_SurfaceViewer *sv);
149 SUMA_SurfaceObject *SUMA_SV_Focus_any_SO(SUMA_SurfaceViewer *sv, int *dov_id);
H A DSUMA_3dVol2Surf.h58 … v2s_param_t *p, SUMA_SurfSpecFile *spec );int get_mappable_surfs( SUMA_SurfaceObject ** slist, in…
67 SUMA_SurfaceObject * so, int sindex );
68 int surf_ave_radius ( float * rad, SUMA_SurfaceObject * so, int disp );
H A DSUMA_suma.c327 SUMA_SurfaceObject **SUMA_GimmeSomeSOs(int *N_SOv) in SUMA_GimmeSomeSOs()
330 SUMA_SurfaceObject **SOv=NULL, *SO=NULL; in SUMA_GimmeSomeSOs()
377 SOv = (SUMA_SurfaceObject **) in SUMA_GimmeSomeSOs()
378 SUMA_realloc(SOv, (*N_SOv)*sizeof(SUMA_SurfaceObject *)); in SUMA_GimmeSomeSOs()
406 SOv = (SUMA_SurfaceObject **) in SUMA_GimmeSomeSOs()
435 SOv = (SUMA_SurfaceObject **) in SUMA_GimmeSomeSOs()
436 SUMA_realloc(SOv, (*N_SOv)*sizeof(SUMA_SurfaceObject *)); in SUMA_GimmeSomeSOs()
461 SOv = (SUMA_SurfaceObject **) in SUMA_GimmeSomeSOs()
462 SUMA_realloc(SOv, (*N_SOv)*sizeof(SUMA_SurfaceObject *)); in SUMA_GimmeSomeSOs()
1018 SUMA_SurfaceObject **SOv=NULL; in main()
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H A DSUMA_driver.h6 SUMA_SurfaceObject *SUMA_NodeXYZComToSO(char *com);
7 SUMA_SurfaceObject *SUMA_ShowSurfComToSO(char *com);
H A DSUMA_SurfWarp.h36 SUMA_SurfaceObject *SO;
66 SUMA_Boolean Debug_Move( MyCircle *C, MyCircleOpt *opt, SUMA_SurfaceObject *SO, double dt, int ni…
68 SUMA_Boolean Neighbor( MyCircle *C, MyCircleOpt *opt, SUMA_SurfaceObject *SO, int niter, int a_nite…
H A DSUMA_Homer.c25 SUMA_SurfaceObject **SOv=NULL; in main()
35 SOv = (SUMA_SurfaceObject **) in main()
36 SUMA_malloc(N_parts * sizeof(SUMA_SurfaceObject *)); in main()
H A DSUMA_SurfaceToSurface.h46 SUMA_M2M_STRUCT *SUMA_GetM2M_NN( SUMA_SurfaceObject *SO1,
47 SUMA_SurfaceObject *SO2,
H A DSUMA_volume_render.h15 SUMA_SurfaceObject *SO,
67 SUMA_SurfaceObject **SUMA_TextureClipPlaneSurfaces(int *N_SOlist);
68 SUMA_VolumeObject *SUMA_VolumeObjectOfClipPlaneSurface(SUMA_SurfaceObject *SO);

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