Searched refs:SampleCall (Results 1 – 6 of 6) sorted by relevance
/dports/biology/stacks/stacks-2.4/src/ |
H A D | models.h | 78 class SampleCall { 87 SampleCall() : lnls_(), call_(snp_type_unk), nts_{{Nt2(),Nt2()}}, gq_(-1) {} in SampleCall() function 102 friend ostream& operator<<(ostream& os, const SampleCall& sc); 108 vector<SampleCall> sample_calls_; // Empty if alleles_.size() < 2. 113 vector<SampleCall>&& sample_calls in SiteCall() 123 SiteCall(map<Nt2,double>&& alleles, vector<SampleCall>&& sample_calls) in SiteCall() 128 const vector<SampleCall>& sample_calls() const {return sample_calls_;} in sample_calls() 136 static Counts<Nt2> tally_allele_counts(const vector<SampleCall>& spldata); 137 static map<Nt2,double> tally_allele_freqs(const vector<SampleCall>& spldata); 390 void SampleCall::set_call(snp_type c, Nt2 rank0_nt, Nt2 rank1_nt, long gq) { in set_call()
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H A D | models.cc | 374 for (const SampleCall& sd : spldata) { in tally_allele_counts() 408 ostream& operator<<(ostream& os, const SampleCall& c) { in operator <<() 456 vector<SampleCall> sample_calls (n_samples); in call() 465 SampleCall& c = sample_calls[sample]; in call() 485 sample_calls = vector<SampleCall>(); in call() 493 SampleCall& c = sample_calls[sample]; in call() 578 vector<SampleCall> sample_calls (n_samples); in call() 600 SampleCall& c = sample_calls[sample]; in call() 645 sample_calls = vector<SampleCall>(); in call() 653 SampleCall& c = sample_calls[sample]; in call() [all …]
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H A D | gstacks.h | 303 const vector<const SampleCall*>& sample_het_calls 324 const vector<const SampleCall*>& sample_het_calls, 343 const vector<const SampleCall*>& sample_het_calls,
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H A D | gstacks.cc | 1925 const vector<SampleCall>& c = calls[col].sample_calls(); in phase_hets() 2019 const SampleCall& c = calls[col].sample_calls()[sample]; in phase_sample_hets() 2026 vector<const SampleCall*> sample_het_calls; //********** in phase_sample_hets() 2091 vector<const SampleCall*> sample_het_calls_reduced; in phase_sample_hets() 2141 const SampleCall& c = *sample_het_calls[0]; in phase_sample_hets() 2200 const vector<const SampleCall*>& sample_het_calls in count_pairwise_cooccurrences() 2217 const SampleCall& c = *sample_het_calls[het_i]; in count_pairwise_cooccurrences() 2244 const vector<const SampleCall*>& sample_het_calls, in assemble_phase_sets() 2524 const SampleCall& scall = sitecall.sample_calls()[sample]; in write_one_locus() 2667 const vector<const SampleCall*>& sample_het_calls, in write_sample_hapgraph()
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/dports/lang/mono/mono-5.10.1.57/mcs/class/System.Runtime.Serialization.Formatters.Soap/Test/ |
H A D | SerializationTest.cs | 400 public int SampleCall (string str, SomeValues sv, ref int acum) in SimpleClass() 522 _sampleDelegate = new SampleDelegate(SampleCall); in Init() 523 _sampleDelegate2 = new SampleDelegate(_simples[0].SampleCall); in Init() 524 _sampleDelegate3 = new SampleDelegate(new SimpleClass('x').SampleCall); in Init() 534 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall()
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/dports/lang/mono/mono-5.10.1.57/mcs/class/corlib/Test/System.Runtime.Serialization/ |
H A D | SerializationTest.cs | 480 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall() method in MonoTests.System.Runtime.Serialization.SimpleClass 602 _sampleDelegate = new SampleDelegate(SampleCall); in Init() 603 _sampleDelegate2 = new SampleDelegate(_simples[0].SampleCall); in Init() 604 _sampleDelegate3 = new SampleDelegate(new SimpleClass('x').SampleCall); in Init() 616 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall() method in MonoTests.System.Runtime.Serialization.SomeValues
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