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Searched refs:SampleCall (Results 1 – 6 of 6) sorted by relevance

/dports/biology/stacks/stacks-2.4/src/
H A Dmodels.h78 class SampleCall {
87 SampleCall() : lnls_(), call_(snp_type_unk), nts_{{Nt2(),Nt2()}}, gq_(-1) {} in SampleCall() function
102 friend ostream& operator<<(ostream& os, const SampleCall& sc);
108 vector<SampleCall> sample_calls_; // Empty if alleles_.size() < 2.
113 vector<SampleCall>&& sample_calls in SiteCall()
123 SiteCall(map<Nt2,double>&& alleles, vector<SampleCall>&& sample_calls) in SiteCall()
128 const vector<SampleCall>& sample_calls() const {return sample_calls_;} in sample_calls()
136 static Counts<Nt2> tally_allele_counts(const vector<SampleCall>& spldata);
137 static map<Nt2,double> tally_allele_freqs(const vector<SampleCall>& spldata);
390 void SampleCall::set_call(snp_type c, Nt2 rank0_nt, Nt2 rank1_nt, long gq) { in set_call()
H A Dmodels.cc374 for (const SampleCall& sd : spldata) { in tally_allele_counts()
408 ostream& operator<<(ostream& os, const SampleCall& c) { in operator <<()
456 vector<SampleCall> sample_calls (n_samples); in call()
465 SampleCall& c = sample_calls[sample]; in call()
485 sample_calls = vector<SampleCall>(); in call()
493 SampleCall& c = sample_calls[sample]; in call()
578 vector<SampleCall> sample_calls (n_samples); in call()
600 SampleCall& c = sample_calls[sample]; in call()
645 sample_calls = vector<SampleCall>(); in call()
653 SampleCall& c = sample_calls[sample]; in call()
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H A Dgstacks.h303 const vector<const SampleCall*>& sample_het_calls
324 const vector<const SampleCall*>& sample_het_calls,
343 const vector<const SampleCall*>& sample_het_calls,
H A Dgstacks.cc1925 const vector<SampleCall>& c = calls[col].sample_calls(); in phase_hets()
2019 const SampleCall& c = calls[col].sample_calls()[sample]; in phase_sample_hets()
2026 vector<const SampleCall*> sample_het_calls; //********** in phase_sample_hets()
2091 vector<const SampleCall*> sample_het_calls_reduced; in phase_sample_hets()
2141 const SampleCall& c = *sample_het_calls[0]; in phase_sample_hets()
2200 const vector<const SampleCall*>& sample_het_calls in count_pairwise_cooccurrences()
2217 const SampleCall& c = *sample_het_calls[het_i]; in count_pairwise_cooccurrences()
2244 const vector<const SampleCall*>& sample_het_calls, in assemble_phase_sets()
2524 const SampleCall& scall = sitecall.sample_calls()[sample]; in write_one_locus()
2667 const vector<const SampleCall*>& sample_het_calls, in write_sample_hapgraph()
/dports/lang/mono/mono-5.10.1.57/mcs/class/System.Runtime.Serialization.Formatters.Soap/Test/
H A DSerializationTest.cs400 public int SampleCall (string str, SomeValues sv, ref int acum) in SimpleClass()
522 _sampleDelegate = new SampleDelegate(SampleCall); in Init()
523 _sampleDelegate2 = new SampleDelegate(_simples[0].SampleCall); in Init()
524 _sampleDelegate3 = new SampleDelegate(new SimpleClass('x').SampleCall); in Init()
534 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall()
/dports/lang/mono/mono-5.10.1.57/mcs/class/corlib/Test/System.Runtime.Serialization/
H A DSerializationTest.cs480 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall() method in MonoTests.System.Runtime.Serialization.SimpleClass
602 _sampleDelegate = new SampleDelegate(SampleCall); in Init()
603 _sampleDelegate2 = new SampleDelegate(_simples[0].SampleCall); in Init()
604 _sampleDelegate3 = new SampleDelegate(new SimpleClass('x').SampleCall); in Init()
616 public int SampleCall (string str, SomeValues sv, ref int acum) in SampleCall() method in MonoTests.System.Runtime.Serialization.SomeValues