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Searched refs:SeedBloomFilter (Results 1 – 9 of 9) sorted by relevance

/dports/biology/abyss/abyss-2.3.1/RResolver/btllib/include/btllib/
H A Dbloom_filter.hpp136 friend class SeedBloomFilter;
259 friend class SeedBloomFilter;
268 class SeedBloomFilter class
273 SeedBloomFilter() {} in SeedBloomFilter() function in btllib::SeedBloomFilter
283 SeedBloomFilter(size_t bytes,
295 SeedBloomFilter(const SeedBloomFilter&) = delete;
296 SeedBloomFilter(SeedBloomFilter&&) = delete;
298 SeedBloomFilter& operator=(const SeedBloomFilter&) = delete;
299 SeedBloomFilter& operator=(SeedBloomFilter&&) = delete;
630 inline SeedBloomFilter::SeedBloomFilter(size_t bytes, in SeedBloomFilter() function in btllib::SeedBloomFilter
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/dports/biology/abyss/abyss-2.3.1/RResolver/btllib/extras/java/
H A DSeedBloomFilter.java11 public class SeedBloomFilter { class
15 protected SeedBloomFilter(long cPtr, boolean cMemoryOwn) { in SeedBloomFilter() method in SeedBloomFilter
20 protected static long getCPtr(SeedBloomFilter obj) { in getCPtr()
39 public SeedBloomFilter() { in SeedBloomFilter() method in SeedBloomFilter
43 …public SeedBloomFilter(long bytes, long k, SWIGTYPE_p_std__vectorT_std__string_t seeds, long hash_… in SeedBloomFilter() method in SeedBloomFilter
47 public SeedBloomFilter(String path) { in SeedBloomFilter() method in SeedBloomFilter
H A DbtllibJNI.java91 public final static native long SeedBloomFilter_get_bytes(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_bytes()
92 public final static native long SeedBloomFilter_get_pop_cnt(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_pop_cnt()
93 …public final static native double SeedBloomFilter_get_occupancy(long jarg1, SeedBloomFilter jarg1_… in SeedBloomFilter_get_occupancy()
94 public final static native long SeedBloomFilter_get_hash_num(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_hash_num()
95 public final static native double SeedBloomFilter_get_fpr(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_fpr()
96 public final static native long SeedBloomFilter_get_k(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_k()
97 public final static native long SeedBloomFilter_get_seeds(long jarg1, SeedBloomFilter jarg1_); in SeedBloomFilter_get_seeds()
98 …public final static native long SeedBloomFilter_get_parsed_seeds(long jarg1, SeedBloomFilter jarg1… in SeedBloomFilter_get_parsed_seeds()
99 …public final static native long SeedBloomFilter_get_hash_num_per_seed(long jarg1, SeedBloomFilter … in SeedBloomFilter_get_hash_num_per_seed()
100 …public final static native long SeedBloomFilter_get_kmer_bloom_filter(long jarg1, SeedBloomFilter … in SeedBloomFilter_get_kmer_bloom_filter()
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H A Dbtllib_wrap.cxx1439 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1insert_1_1SWIG_10()
1459 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1insert_1_1SWIG_11()
1481 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1contains_1_1SWIG_10()
1505 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1contains_1_1SWIG_11()
1530 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1contains_1_1SWIG_12()
1547 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1contains_1_1SWIG_13()
1568 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1get_1bytes()
1583 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1get_1pop_1cnt()
1598 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1get_1occupancy()
1613 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in Java_btllib_btllibJNI_SeedBloomFilter_1get_1hash_1num()
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H A Dmeson.build28 …_p_std__ios.java','./SWIGTYPE_p_uint8_t.java','./DataStream.java','./SeedBloomFilter.java','./SWIG…
/dports/biology/abyss/abyss-2.3.1/RResolver/
H A DBloomFilters.h26 extern btllib::SeedBloomFilter *g_spacedSeedsBloom;
H A DBloomFilters.cpp17 btllib::SeedBloomFilter *g_spacedSeedsBloom = nullptr;
254 …g_spacedSeedsBloom = new btllib::SeedBloomFilter(bloomBytesSpacedSeeds, r, patterns, SPACED_SEEDS_…
/dports/biology/abyss/abyss-2.3.1/RResolver/btllib/tests/
H A Dbloom_filter.cpp51 btllib::SeedBloomFilter seed_bf(1024 * 1024, seq.size(), { seed1, seed2 }, 4); in main()
/dports/biology/abyss/abyss-2.3.1/RResolver/btllib/extras/python/
H A Dbtllib_wrap.cxx12951 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_insert__SWIG_0()
12990 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_insert__SWIG_1()
13075 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_contains__SWIG_0()
13115 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_contains__SWIG_1()
13151 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_contains__SWIG_2()
13180 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_contains__SWIG_3()
13291 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_get_bytes()
13313 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_get_pop_cnt()
13335 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_get_occupancy()
13357 btllib::SeedBloomFilter *arg1 = (btllib::SeedBloomFilter *) 0 ; in _wrap_SeedBloomFilter_get_hash_num()
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