| /dports/devel/R-cran-Rcpp/Rcpp/inst/include/Rcpp/sugar/functions/ |
| H A D | seq_along.h | 28 class SeqLen : public VectorBase< INTSXP,false,SeqLen > {
30 SeqLen( R_xlen_t len_ ) : len(len_){} in SeqLen() function
44 inline sugar::SeqLen seq_along( const Rcpp::VectorBase<RTYPE,NA,T>& t){ in seq_along()
45 return sugar::SeqLen( t.size() ) ; in seq_along()
48 inline sugar::SeqLen seq_len( const size_t& n){ in seq_len()
49 return sugar::SeqLen( n ) ; in seq_len()
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| /dports/devel/rpc2/rpc2-2.14/rpc2-src/ |
| H A D | pack_helper.c | 174 if (pack_unsigned(buf, ptr->SeqLen)) in pack_countedbs()
182 buf->buffer += _PAD(ptr->SeqLen); in pack_countedbs()
188 if (unpack_unsigned(buf, &ptr->SeqLen)) in unpack_countedbs()
195 buf->buffer += _PAD(ptr->SeqLen); in unpack_countedbs()
204 if (pack_unsigned(buf, ptr->SeqLen)) in pack_boundedbs()
208 if (ptr->SeqLen != 0) { in pack_boundedbs()
214 buf->buffer += _PAD(ptr->SeqLen); in pack_boundedbs()
237 ptr->SeqLen = seqlen; in unpack_boundedbs()
239 ptr->SeqLen = 0; in unpack_boundedbs()
242 if (ptr->SeqLen > ptr->MaxSeqLen) in unpack_boundedbs()
[all …]
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| H A D | multi2.c | 482 _length = ((RPC2_CountedBS *)(*args))->SeqLen; in pack()
489 _length = (*(*args)->cbsp)->SeqLen; in pack()
494 _length = (*args)->cbs->SeqLen; in pack()
510 _length = ((RPC2_BoundedBS *)(*args))->SeqLen; in pack()
517 _maxlength = (*(*args)->bbs).SeqLen; in pack()
518 _length = (*(*args)->bbs).SeqLen; in pack()
524 _length = (*(*args)->bbsp)->SeqLen; in pack()
751 (*a_types)->size += _PAD(bbsbodyp->SeqLen); in get_len()
909 (*args)->cbsp[offset]->SeqLen = _length; in new_unpack()
932 (*args)->bbsp[offset]->SeqLen = _length; in new_unpack()
[all …]
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| H A D | ctest.c | 327 sed.Value.SmartFTPD.FileInfo.ByAddr.vmfile.SeqLen = VMCurrFileSize; /* ignored for fetch */ in main()
397 VMCurrFileSize = sed.Value.SmartFTPD.FileInfo.ByAddr.vmfile.SeqLen; in main()
582 w->SeqLen = 1+strlen((char *)w->SeqBody); in GetWho()
592 w->SeqLen = 1+strlen((char *)w->SeqBody); in GetWho()
634 who.SeqLen = 0; in DoBinding()
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| H A D | trace.h | 392 …tea->ClientIdent.SeqLen = Bparms->ClientIdent->SeqLen; /* not actual length, could be truncated */\
393 if (Bparms->ClientIdent->SeqLen < sizeof(tea->ClientIdent_Value))\
394 memcpy(tea->ClientIdent_Value, Bparms->ClientIdent->SeqBody, Bparms->ClientIdent->SeqLen);\
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| H A D | sftp1.c | 488 …dr.vmfile.SeqBody, sftpd->FileInfo.ByAddr.vmfile.MaxSeqLen, sftpd->FileInfo.ByAddr.vmfile.SeqLen); in SFTP_CheckSE()
498 rc = sftp_vfwritefile(se, (char *)p->vmfile.SeqBody, p->vmfile.SeqLen); in SFTP_CheckSE()
505 sftp_Progress(se->SDesc, p->vmfile.SeqLen); in SFTP_CheckSE()
539 sftp_Progress(se->SDesc, p->vmfile.SeqLen); in SFTP_CheckSE()
1162 p->vmfile.SeqLen = len; in sftp_AllocPiggySDesc()
1240 …ddr.vmfile.SeqBody, sftpd->FileInfo.ByAddr.vmfile.MaxSeqLen, sftpd->FileInfo.ByAddr.vmfile.SeqLen);
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| H A D | debug.c | 671 fprintf(outFile, "ClientIdent: SeqLen = %u SeqBody\"", tea->ClientIdent.SeqLen); in rpc2_PrintTraceElem()
672 max = (tea->ClientIdent.SeqLen < sizeof(tea->ClientIdent_Value)) ? tea->ClientIdent.SeqLen : in rpc2_PrintTraceElem()
675 if (max < tea->ClientIdent.SeqLen) fprintf(outFile, "....."); in rpc2_PrintTraceElem()
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| H A D | sftp3.c | 129 if (sftpd->SeekOffset > sftpd->FileInfo.ByAddr.vmfile.SeqLen) in sftp_InitIO()
136 if (IsSink(sEntry)) sftpd->FileInfo.ByAddr.vmfile.SeqLen = 0; in sftp_InitIO()
1310 length = se->SDesc->Value.SmartFTPD.FileInfo.ByAddr.vmfile.SeqLen; in sftp_piggybackfilesize()
1366 p->vmfile.SeqLen = nbytes; in sftp_vfwritefile()
1420 bytesleft = x->vmfile.SeqLen - x->vmfilep; in sftp_vfreadv()
1482 p->vmfile.SeqLen = p->vmfilep; in sftp_vfwritev()
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| H A D | rpc2a.c | 808 (Bparms->ClientIdent == NULL ? 0 : Bparms->ClientIdent->SeqLen); in RPC2_NewBinding()
849 ib->FakeBody_ClientIdent_SeqLen = htonl(Bparms->ClientIdent->SeqLen); in RPC2_NewBinding()
851 memcpy(ib->Text, Bparms->ClientIdent->SeqBody, Bparms->ClientIdent->SeqLen); in RPC2_NewBinding()
1376 cident->SeqLen = ntohl(ncb->ClientIdent_SeqLen); in MakeFake()
1381 if ((char *)&ib1->Text + cident->SeqLen > in MakeFake()
1386 memmove(cident->SeqBody, &ib1->Text, cident->SeqLen); in MakeFake()
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| H A D | stest.c | 387 sed.Value.SmartFTPD.FileInfo.ByAddr.vmfile.SeqLen = VMCurrFileSize; in ProcessPacket()
415 VMCurrFileSize = sed.Value.SmartFTPD.FileInfo.ByAddr.vmfile.SeqLen; in ProcessPacket()
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| H A D | rpc2test.c | 780 ConnVector[i].Identity.SeqLen = 1+strlen(ConnVector[i].NameBuf); in GetConns()
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| /dports/devel/rpc2/rpc2-2.14/include/rpc2/ |
| H A D | multi.h | 106 if (mode == OUT_MODE) (object).SeqLen = 0; \
109 if ((object).SeqLen > 0) \
110 memcpy(name##_bufs[name##_local_i].SeqBody, (object).SeqBody, (int)(object).SeqLen);\
132 RPC2_Integer seqlen = name##_bufs[ix].SeqLen;\
133 (object).SeqLen = seqlen;\
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| H A D | rpc2.h | 290 RPC2_Unsigned SeqLen; /*length of SeqBody*/ member
302 RPC2_Unsigned SeqLen; /*number of interesting bytes in SeqBody*/ member
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| /dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
| H A D | sstofa.in | 18 $SeqLen = $3;
25 $SeqDescription = "$bounds $isotype ($ac) $SeqLen bp Sc: $score";
36 $SeqLen = 0;
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| /dports/cad/opencascade/opencascade-7.6.0/src/TransferBRep/ |
| H A D | TransferBRep.cxx | 237 Standard_Integer SeqLen = EntityTypes->Length(); in TransferResultInfo() local
239 for (i = 1; i <= SeqLen; i++) { in TransferResultInfo()
253 for (Standard_Integer index = 1; index <= SeqLen; index++) { in TransferResultInfo()
275 Standard_Integer SeqLen = ShapeTypes->Length(); in TransferResultInfo() local
277 for (i = 1; i <= SeqLen; i++) { in TransferResultInfo()
293 for (Standard_Integer index = 1; index <= SeqLen; index++) { in TransferResultInfo()
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| /dports/biology/emboss/EMBOSS-6.6.0/doc/programs/master/emboss/apps/inc/ |
| H A D | infoalign.output | 7 # USA Name SeqLen AlignLen Gaps GapLen Ident Similar Differ % Change Weight Desc…
23 # Name SeqLen AlignLen Gaps GapLen Ident Similar Differ % Change Weight Description
186 # USA Name SeqLen AlignLen Gaps GapLen Ident Similar Differ % Change Weight Desc…
202 # USA Name SeqLen AlignLen Gaps GapLen Ident Similar Differ % Change Weight Desc…
216 # USA Name SeqLen AlignLen Gaps GapLen Ident Similar Differ % Change Weight Desc…
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/ |
| H A D | msms.cpp | 82 int CCleave::findfirst(char* Seq, int Pos, int SeqLen) in findfirst() argument
85 for (i = Pos; i < SeqLen; i++) in findfirst()
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| H A D | msms.hpp | 542 int findfirst(char* Seq, int Pos, int SeqLen);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | score.cpp | 47 int ii = (strand == ePlus) ? i : SeqLen()-1-i; in BEGIN_SCOPE()
48 if(ii < 0 || ii+2 >= SeqLen()) return false; //out of range in BEGIN_SCOPE()
56 int ii = (strand == ePlus) ? i : SeqLen()-1-i; in isStop()
57 if(ii < 0 || ii+2 >= SeqLen()) return false; //out of range in isStop()
85 int ii = (strand == ePlus) ? i : SeqLen()-1-i; in isAG()
86 if(ii-1 < 0 || ii >= SeqLen()) return false; //out of range in isAG()
94 int ii = (strand == ePlus) ? i : SeqLen()-1-i; in isGT()
95 if(ii < 0 || ii+1 >= SeqLen()) return false; //out of range in isGT()
111 int ii = (strand == ePlus) ? i : SeqLen()-1-i; in SeqPtr()
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| H A D | score.hpp | 89 int SeqLen() const { return (int)m_seq[0].size(); } in SeqLen() function in CSeqScores
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| H A D | gnomon_engine.cpp | 202 TSignedSeqPos right = seq_map.MapEditedToOrig(m_data->m_ss->SeqLen()-1); in PartialModelStepBack()
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| H A D | hmm.cpp | 93 return min(a,m_seqscr->SeqLen()-1); in RegionStart()
99 if(NoRightEnd()) return m_seqscr->SeqLen()-1; in RegionStop()
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| H A D | hmm.hpp | 286 int Stop() const { return NoRightEnd() ? m_seqscr->SeqLen()-1 : m_stop; } in Stop()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
| H A D | alignment_scorer.cpp | 347 … TSeqPos SeqLen = Scope.GetBioseqHandle(Curr->GetSeq_id(Row)).GetInst_Length(); in ScoreAlignments() local
352 Pair.second = SeqLen - Stop - 1; in ScoreAlignments()
355 Pair.first = SeqLen - Stop - 1; in ScoreAlignments()
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| /dports/security/hs-cryptol/cryptol-2.11.0/_cabal_deps/sbv-8.12/Data/SBV/ |
| H A D | List.hs | 65 length = lift1 SeqLen (Just (fromIntegral . P.length))
|