/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | findspl.c | 81 for (current = SeqLocFindNext(slp, NULL); current != NULL; in FindAndPrint() 82 current = SeqLocFindNext(slp, current)) in FindAndPrint()
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H A D | releasescan.c | 93 slp = SeqLocFindNext (sfp->location, NULL); in DoFeat() 100 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in DoFeat()
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H A D | dustn.c | 134 while((slp=SeqLocFindNext(slp_dust,slp))!=NULL) { in Main()
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H A D | cspeedtest.c | 133 slp = SeqLocFindNext (loc, NULL); in DoVisitCodingRegions() 147 slp = SeqLocFindNext (loc, slp); in DoVisitCodingRegions() 184 slp = SeqLocFindNext (loc, NULL); in DoSuggestIntervals() 198 slp = SeqLocFindNext (loc, slp); in DoSuggestIntervals()
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H A D | nps2gps.c | 155 slp = SeqLocFindNext (cds->location, NULL); in LclMakeNucProtCDS() 161 slp = SeqLocFindNext (cds->location, slp); in LclMakeNucProtCDS() 719 while ((tslp = SeqLocFindNext(slp, tslp)) != NULL) { in MakeIdFromLocation() 1513 slp = SeqLocFindNext (ncrna->location, NULL); in InstantiateNCRNA() 1519 slp = SeqLocFindNext (ncrna->location, slp); in InstantiateNCRNA() 1706 slp = SeqLocFindNext (copy->location, NULL); in InstantiateNCRNA() 1717 slp = SeqLocFindNext (copy->location, slp); in InstantiateNCRNA()
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H A D | asn2all.c | 277 slp = SeqLocFindNext (loc, NULL); in MapLocationOntoDeltaParent() 305 slp = SeqLocFindNext (loc, slp); in MapLocationOntoDeltaParent() 1056 slp = SeqLocFindNext (sfp->location, NULL); in ProcessSingleRecord() 1059 slp = SeqLocFindNext (sfp->location, slp); in ProcessSingleRecord()
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H A D | asn2fsa.c | 158 loc = SeqLocFindNext (slp, NULL); in QueueFarSegments() 194 while ((slp = SeqLocFindNext (&vn, slp)) != NULL) { in QueueFarBioseqs()
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H A D | snpsynon.c | 394 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in FindSNPsOnCDS()
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | codon.c | 88 while(!is_end && ((slp = SeqLocFindNext(cdloc, slp))!=NULL)) in aa_to_codon() 389 while(!is_end && ((slp = SeqLocFindNext(sfp->location, slp))!=NULL)) in aa_to_dnaloc() 560 while((slp = SeqLocFindNext(sfp->location, slp))!=NULL) in print_protein_for_cds()
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H A D | seqport.c | 904 SeqLocFindNext((SeqLocPtr)(currchunk->data.ptrvalue), NULL); in SeqPortNew() 3183 slp = SeqLocFindNext (loc, NULL); in SeqPortStreamSetup() 3197 slp = SeqLocFindNext (loc, slp); in SeqPortStreamSetup() 4070 curr = SeqLocFindNext(slp, NULL); in GetFrameFromLoc() 4100 while ((curr = SeqLocFindNext(slp, last)) != NULL) in GetFrameFromLoc() 4361 tmp1 = SeqLocFindNext(sfp->location, NULL); in aaFeatLoc_to_dnaFeatLoc() 4362 tmp2 = SeqLocFindNext(dnaLoc, NULL); in aaFeatLoc_to_dnaFeatLoc() 5338 slp = SeqLocFindNext (&vn, NULL); in SegRevComp() 5372 slp = SeqLocFindNext (&vn, slp); in SegRevComp() 6269 slp = SeqLocFindNext (location, NULL); in ReadCodingRegionBases() [all …]
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H A D | edutil.c | 641 while ((curr = SeqLocFindNext(slp, curr)) != NULL) in SegLocToPartsEx() 645 while ((tmp = SeqLocFindNext(&thead, tmp)) != NULL) in SegLocToPartsEx() 810 while ((scurr = SeqLocFindNext(&vn, scurr)) != NULL) in SeqLocsToDeltaSeqs() 997 while ((slp = SeqLocFindNext(head, slp)) != NULL) in BioseqDeleteEx() 1204 while ((tmp = SeqLocFindNext(slp, tmp)) != NULL) in SeqDeleteByLocEx() 3895 while ((slp = SeqLocFindNext(piece, slp)) != NULL) in SeqLocSubtract() 6182 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqEdDeleteFromSegOrDeltaBsp() 6329 this_slp = SeqLocFindNext (sfp->location, NULL); in ReStitchLocation() 6334 next_slp = SeqLocFindNext (sfp->location, this_slp); in ReStitchLocation() 7122 for (this_slp = SeqLocFindNext (slp, NULL); in SeqEdAdjustFeatureInterval() [all …]
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H A D | seqmgr.c | 4135 slp = SeqLocFindNext (loc, NULL); in FindAppropriateBioseq() 6198 slp = SeqLocFindNext (sfp->location, NULL); in RecordFeaturesInBioseqs() 6209 slp = SeqLocFindNext (sfp->location, slp); in RecordFeaturesInBioseqs() 8667 a = SeqLocFindNext (slp, NULL); in TestForOverlap() 8681 a = SeqLocFindNext (slp, a); in TestForOverlap() 8758 loc = SeqLocFindNext (sfp->location, NULL); in TransSplicedStrandsMatch() 8764 loc = SeqLocFindNext (sfp->location, loc); in TransSplicedStrandsMatch() 10723 for (slp = SeqLocFindNext (location, NULL); in TrimLocInSegment() 10725 slp = SeqLocFindNext (location, slp)) { in TrimLocInSegment() 11140 loc = SeqLocFindNext (slp, NULL); in CollectAllSegments() [all …]
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H A D | satutil.c | 111 while((slp = SeqLocFindNext(loc, slp)) != NULL) in load_fuzz_info() 922 while((slp = SeqLocFindNext(sfp->location, slp)) != NULL) in CDS_HAS_STOP_CODON() 1100 while((slp = SeqLocFindNext(source_sfp->location, slp)) != NULL && !stop_here) in CopyFeatureFromAlign()
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H A D | gather.c | 122 while((one_loc = SeqLocFindNext(slp, one_loc))!=NULL) in ck_extreme() 147 while((one_loc = SeqLocFindNext(slp, one_loc))!=NULL) in ck_parts_overlap() 214 while ((tslp = SeqLocFindNext(seq_loc, tslp)) != NULL) in SeqLocOffset() 770 while ((slp = SeqLocFindNext(newhead, slp)) != NULL) in SeqLocReMap() 1525 while ((tslp = SeqLocFindNext(head, tslp)) != NULL) in GatherSeqFeat() 2073 while((t_slp = SeqLocFindNext(slp, t_slp)) != NULL) in is_fuzz_loc() 3234 while ((slp = SeqLocFindNext(head, slp)) != NULL) in GatherBioseqFunc() 3270 tslp = SeqLocFindNext(segloc, tslp); in GatherBioseqFunc() 3855 while ((slp = SeqLocFindNext(head, slp)) != NULL) in GatherBioseqPartsFunc() 4031 while ((slp = SeqLocFindNext(ip->segloc, slp)) != NULL) in IGCCBuild() [all …]
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H A D | sqnutil1.c | 1220 slp = SeqLocFindNext (location, NULL); in CheckSeqLocForPartialEx() 1360 slp = SeqLocFindNext (location, NULL); in SetSeqLocPartialEx() 1504 slp = SeqLocFindNext (location, NULL); in GetSeqLocPartialSet() 1524 slp = SeqLocFindNext (location, slp); in GetSeqLocPartialSet() 1541 slp = SeqLocFindNext (location, NULL); in SetSeqLocPartialSet() 1553 slp = SeqLocFindNext (location, slp); in SetSeqLocPartialSet() 11954 slp = SeqLocFindNext (location, NULL); in FixWrongFuzzOnPlusStrand() 12013 slp = SeqLocFindNext (location, NULL); in FixWrongFuzzOnMinusStrand() 12092 loc = SeqLocFindNext (slp, NULL); in CleanUpSeqLoc() 12118 loc = SeqLocFindNext (slp, loc); in CleanUpSeqLoc() [all …]
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H A D | sequtil.c | 6921 while ((tmp = SeqLocFindNext (slp, tmp)) != NULL) { in SeqLocCoverage() 6929 while ((tmp = SeqLocFindNext (slp, tmp)) != NULL) { in SeqLocCoverage() 7152 while ((tmp = SeqLocFindNext(slp, tmp)) != NULL) in SeqLocCheck() 7219 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqLocPartialCheckEx() 7229 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqLocPartialCheckEx() 7711 while ((curr = SeqLocFindNext(slp, curr)) != NULL) in CheckPointInBioseq() 7829 while ((pnt = SeqLocFindNext(of, pnt)) != NULL) in GetThePointForOffsetEx() 8003 while ((pnt = SeqLocFindNext(of, pnt)) != NULL) in GetPointsForLeftAndRightOffsets() 8132 while ((tmp = SeqLocFindNext(in, tmp)) != NULL) in CheckOffsetInLoc() 8247 while ((slp = SeqLocFindNext(seqloc, slp)) != NULL) in SeqLocMol() [all …]
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H A D | valid.c | 2913 slp = SeqLocFindNext (sfp->location, NULL); in CheckFeatLocAndProd() 10593 slp = SeqLocFindNext (loc, NULL); in IsLocInSmallGenomeSet() 10599 slp = SeqLocFindNext (loc, slp); in IsLocInSmallGenomeSet() 11053 slp = SeqLocFindNext (mappedloc, NULL); in CheckMultiIntervalGene() 11056 slp = SeqLocFindNext (mappedloc, slp); in CheckMultiIntervalGene() 18922 for (slp = SeqLocFindNext (loc, NULL); slp != NULL; slp = SeqLocFindNext (loc, slp)) { in GetFeatsInGaps() 21019 slp = SeqLocFindNext (location, NULL); in LocationIsFar() 21057 slp = SeqLocFindNext (location, slp); in LocationIsFar() 23987 …for (slp = SeqLocFindNext (sfp->location, NULL); slp != NULL; slp = SeqLocFindNext (sfp->location,… in ValidateImpFeat() 26803 for (tmp = SeqLocFindNext (slp, NULL); tmp != NULL; tmp = SeqLocFindNext (slp, tmp)) { in ValidateAnticodon() [all …]
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H A D | asn2gnb3.c | 5488 for (slpx = SeqLocFindNext (slp, NULL); slpx != NULL; slpx = SeqLocFindNext (slp, slpx)) { in GetSourcesOnBioseq() 5737 loc = SeqLocFindNext (slp, NULL); in GetSourcesOnSeg() 5922 slp = SeqLocFindNext (location, NULL); in CleanupPackedSeqInt() 5932 slp = SeqLocFindNext (location, slp); in CleanupPackedSeqInt() 6997 slp = SeqLocFindNext (sfp->location, NULL); in GetFeatsOnBioseq() 7005 slp = SeqLocFindNext (sfp->location, slp); in GetFeatsOnBioseq() 7368 slp = SeqLocFindNext (sfp->location, NULL); in GetFeatsOnBioseq() 7374 slp = SeqLocFindNext (sfp->location, slp); in GetFeatsOnBioseq() 7685 loc = SeqLocFindNext (slp, NULL); in GetFeatsOnSeg()
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H A D | asn2gnb5.c | 3399 slp = SeqLocFindNext (loc, NULL); in AddReferenceToGbseq() 3409 slp = SeqLocFindNext (loc, slp); in AddReferenceToGbseq() 3743 slp = SeqLocFindNext (loc, NULL); in FormatReferenceBlock() 3745 nextslp = SeqLocFindNext (loc, slp); in FormatReferenceBlock()
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | blast_dust.c | 190 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDustEx() 201 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDustEx()
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H A D | dust.c | 255 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDust() 266 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDust()
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H A D | toporg.c | 6398 loc = SeqLocFindNext (slp, NULL); in AddSegToDeltaSeq() 6897 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual() 6902 slp = SeqLocFindNext (&vn, slp); in SegSeqNullToVirtual() 6908 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual() 6942 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual() 6949 slp = SeqLocFindNext (&vn, slp); in SegSeqNullToVirtual() 7006 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual() 7016 slp = SeqLocFindNext (&vn, slp); in ForceSegSeqNullToVirtual() 7022 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual() 7056 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual() [all …]
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/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | salpanel.c | 2869 slp = SeqLocFindNext (location, NULL); in MergeAdjacentSeqLocIntervals() 2970 slp = SeqLocFindNext (location, slp); in MergeAdjacentSeqLocIntervals() 3313 master_subloc = SeqLocFindNext (master_location, NULL); in GetPropagatedSublocations() 3363 master_subloc = SeqLocFindNext (master_location, master_subloc); in GetPropagatedSublocations() 3539 slp = SeqLocFindNext (location, NULL); in ExtendLocToEnd() 3542 slp = SeqLocFindNext (location, slp); in ExtendLocToEnd() 3582 slp = SeqLocFindNext (sfp->location, NULL); in TruncateCDS() 3603 slp = SeqLocFindNext (sfp->location, slp); in TruncateCDS() 4180 slp = SeqLocFindNext (sfp->location, NULL); in DoFixCDS() 4190 slp = SeqLocFindNext (sfp->location, slp); in DoFixCDS() [all …]
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H A D | dlgutil1.c | 4183 slp = SeqLocFindNext (&vn, NULL); in FillInProducts() 4198 slp = SeqLocFindNext (&vn, slp); in FillInProducts() 4224 slp = SeqLocFindNext (&vn, NULL); in SegmentedEntryList() 4227 slp = SeqLocFindNext (&vn, slp); in SegmentedEntryList() 4282 tmp_slp = SeqLocFindNext (slp, NULL); in FindLastStopForSeqId() 4294 tmp_slp = SeqLocFindNext (slp, tmp_slp); in FindLastStopForSeqId() 4323 tmp_slp = SeqLocFindNext (slp, NULL); in CorrectIntervalEditorSeqIdEnum() 4361 tmp_slp = SeqLocFindNext (slp, tmp_slp); in CorrectIntervalEditorSeqIdEnum() 4575 slp = SeqLocFindNext (location, NULL); in SeqLocPtrToIntervalPage() 4581 next = SeqLocFindNext (location, slp); in SeqLocPtrToIntervalPage() [all …]
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/dports/biology/ncbi-toolkit/ncbi/access/ |
H A D | pmfapi.c | 3131 loc = SeqLocFindNext (slp, NULL); in LookupSegments() 3185 while ((slp = SeqLocFindNext (&vn, slp)) != NULL) { in LookupBioseqs() 3210 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in LookupLocations() 3225 while ((slp = SeqLocFindNext (sfp->product, slp)) != NULL) { in LookupProducts()
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