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Searched refs:SeqLocFindNext (Results 1 – 25 of 63) sorted by relevance

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/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dfindspl.c81 for (current = SeqLocFindNext(slp, NULL); current != NULL; in FindAndPrint()
82 current = SeqLocFindNext(slp, current)) in FindAndPrint()
H A Dreleasescan.c93 slp = SeqLocFindNext (sfp->location, NULL); in DoFeat()
100 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in DoFeat()
H A Ddustn.c134 while((slp=SeqLocFindNext(slp_dust,slp))!=NULL) { in Main()
H A Dcspeedtest.c133 slp = SeqLocFindNext (loc, NULL); in DoVisitCodingRegions()
147 slp = SeqLocFindNext (loc, slp); in DoVisitCodingRegions()
184 slp = SeqLocFindNext (loc, NULL); in DoSuggestIntervals()
198 slp = SeqLocFindNext (loc, slp); in DoSuggestIntervals()
H A Dnps2gps.c155 slp = SeqLocFindNext (cds->location, NULL); in LclMakeNucProtCDS()
161 slp = SeqLocFindNext (cds->location, slp); in LclMakeNucProtCDS()
719 while ((tslp = SeqLocFindNext(slp, tslp)) != NULL) { in MakeIdFromLocation()
1513 slp = SeqLocFindNext (ncrna->location, NULL); in InstantiateNCRNA()
1519 slp = SeqLocFindNext (ncrna->location, slp); in InstantiateNCRNA()
1706 slp = SeqLocFindNext (copy->location, NULL); in InstantiateNCRNA()
1717 slp = SeqLocFindNext (copy->location, slp); in InstantiateNCRNA()
H A Dasn2all.c277 slp = SeqLocFindNext (loc, NULL); in MapLocationOntoDeltaParent()
305 slp = SeqLocFindNext (loc, slp); in MapLocationOntoDeltaParent()
1056 slp = SeqLocFindNext (sfp->location, NULL); in ProcessSingleRecord()
1059 slp = SeqLocFindNext (sfp->location, slp); in ProcessSingleRecord()
H A Dasn2fsa.c158 loc = SeqLocFindNext (slp, NULL); in QueueFarSegments()
194 while ((slp = SeqLocFindNext (&vn, slp)) != NULL) { in QueueFarBioseqs()
H A Dsnpsynon.c394 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in FindSNPsOnCDS()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dcodon.c88 while(!is_end && ((slp = SeqLocFindNext(cdloc, slp))!=NULL)) in aa_to_codon()
389 while(!is_end && ((slp = SeqLocFindNext(sfp->location, slp))!=NULL)) in aa_to_dnaloc()
560 while((slp = SeqLocFindNext(sfp->location, slp))!=NULL) in print_protein_for_cds()
H A Dseqport.c904 SeqLocFindNext((SeqLocPtr)(currchunk->data.ptrvalue), NULL); in SeqPortNew()
3183 slp = SeqLocFindNext (loc, NULL); in SeqPortStreamSetup()
3197 slp = SeqLocFindNext (loc, slp); in SeqPortStreamSetup()
4070 curr = SeqLocFindNext(slp, NULL); in GetFrameFromLoc()
4100 while ((curr = SeqLocFindNext(slp, last)) != NULL) in GetFrameFromLoc()
4361 tmp1 = SeqLocFindNext(sfp->location, NULL); in aaFeatLoc_to_dnaFeatLoc()
4362 tmp2 = SeqLocFindNext(dnaLoc, NULL); in aaFeatLoc_to_dnaFeatLoc()
5338 slp = SeqLocFindNext (&vn, NULL); in SegRevComp()
5372 slp = SeqLocFindNext (&vn, slp); in SegRevComp()
6269 slp = SeqLocFindNext (location, NULL); in ReadCodingRegionBases()
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H A Dedutil.c641 while ((curr = SeqLocFindNext(slp, curr)) != NULL) in SegLocToPartsEx()
645 while ((tmp = SeqLocFindNext(&thead, tmp)) != NULL) in SegLocToPartsEx()
810 while ((scurr = SeqLocFindNext(&vn, scurr)) != NULL) in SeqLocsToDeltaSeqs()
997 while ((slp = SeqLocFindNext(head, slp)) != NULL) in BioseqDeleteEx()
1204 while ((tmp = SeqLocFindNext(slp, tmp)) != NULL) in SeqDeleteByLocEx()
3895 while ((slp = SeqLocFindNext(piece, slp)) != NULL) in SeqLocSubtract()
6182 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqEdDeleteFromSegOrDeltaBsp()
6329 this_slp = SeqLocFindNext (sfp->location, NULL); in ReStitchLocation()
6334 next_slp = SeqLocFindNext (sfp->location, this_slp); in ReStitchLocation()
7122 for (this_slp = SeqLocFindNext (slp, NULL); in SeqEdAdjustFeatureInterval()
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H A Dseqmgr.c4135 slp = SeqLocFindNext (loc, NULL); in FindAppropriateBioseq()
6198 slp = SeqLocFindNext (sfp->location, NULL); in RecordFeaturesInBioseqs()
6209 slp = SeqLocFindNext (sfp->location, slp); in RecordFeaturesInBioseqs()
8667 a = SeqLocFindNext (slp, NULL); in TestForOverlap()
8681 a = SeqLocFindNext (slp, a); in TestForOverlap()
8758 loc = SeqLocFindNext (sfp->location, NULL); in TransSplicedStrandsMatch()
8764 loc = SeqLocFindNext (sfp->location, loc); in TransSplicedStrandsMatch()
10723 for (slp = SeqLocFindNext (location, NULL); in TrimLocInSegment()
10725 slp = SeqLocFindNext (location, slp)) { in TrimLocInSegment()
11140 loc = SeqLocFindNext (slp, NULL); in CollectAllSegments()
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H A Dsatutil.c111 while((slp = SeqLocFindNext(loc, slp)) != NULL) in load_fuzz_info()
922 while((slp = SeqLocFindNext(sfp->location, slp)) != NULL) in CDS_HAS_STOP_CODON()
1100 while((slp = SeqLocFindNext(source_sfp->location, slp)) != NULL && !stop_here) in CopyFeatureFromAlign()
H A Dgather.c122 while((one_loc = SeqLocFindNext(slp, one_loc))!=NULL) in ck_extreme()
147 while((one_loc = SeqLocFindNext(slp, one_loc))!=NULL) in ck_parts_overlap()
214 while ((tslp = SeqLocFindNext(seq_loc, tslp)) != NULL) in SeqLocOffset()
770 while ((slp = SeqLocFindNext(newhead, slp)) != NULL) in SeqLocReMap()
1525 while ((tslp = SeqLocFindNext(head, tslp)) != NULL) in GatherSeqFeat()
2073 while((t_slp = SeqLocFindNext(slp, t_slp)) != NULL) in is_fuzz_loc()
3234 while ((slp = SeqLocFindNext(head, slp)) != NULL) in GatherBioseqFunc()
3270 tslp = SeqLocFindNext(segloc, tslp); in GatherBioseqFunc()
3855 while ((slp = SeqLocFindNext(head, slp)) != NULL) in GatherBioseqPartsFunc()
4031 while ((slp = SeqLocFindNext(ip->segloc, slp)) != NULL) in IGCCBuild()
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H A Dsqnutil1.c1220 slp = SeqLocFindNext (location, NULL); in CheckSeqLocForPartialEx()
1360 slp = SeqLocFindNext (location, NULL); in SetSeqLocPartialEx()
1504 slp = SeqLocFindNext (location, NULL); in GetSeqLocPartialSet()
1524 slp = SeqLocFindNext (location, slp); in GetSeqLocPartialSet()
1541 slp = SeqLocFindNext (location, NULL); in SetSeqLocPartialSet()
1553 slp = SeqLocFindNext (location, slp); in SetSeqLocPartialSet()
11954 slp = SeqLocFindNext (location, NULL); in FixWrongFuzzOnPlusStrand()
12013 slp = SeqLocFindNext (location, NULL); in FixWrongFuzzOnMinusStrand()
12092 loc = SeqLocFindNext (slp, NULL); in CleanUpSeqLoc()
12118 loc = SeqLocFindNext (slp, loc); in CleanUpSeqLoc()
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H A Dsequtil.c6921 while ((tmp = SeqLocFindNext (slp, tmp)) != NULL) { in SeqLocCoverage()
6929 while ((tmp = SeqLocFindNext (slp, tmp)) != NULL) { in SeqLocCoverage()
7152 while ((tmp = SeqLocFindNext(slp, tmp)) != NULL) in SeqLocCheck()
7219 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqLocPartialCheckEx()
7229 while ((slp = SeqLocFindNext(head, slp)) != NULL) in SeqLocPartialCheckEx()
7711 while ((curr = SeqLocFindNext(slp, curr)) != NULL) in CheckPointInBioseq()
7829 while ((pnt = SeqLocFindNext(of, pnt)) != NULL) in GetThePointForOffsetEx()
8003 while ((pnt = SeqLocFindNext(of, pnt)) != NULL) in GetPointsForLeftAndRightOffsets()
8132 while ((tmp = SeqLocFindNext(in, tmp)) != NULL) in CheckOffsetInLoc()
8247 while ((slp = SeqLocFindNext(seqloc, slp)) != NULL) in SeqLocMol()
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H A Dvalid.c2913 slp = SeqLocFindNext (sfp->location, NULL); in CheckFeatLocAndProd()
10593 slp = SeqLocFindNext (loc, NULL); in IsLocInSmallGenomeSet()
10599 slp = SeqLocFindNext (loc, slp); in IsLocInSmallGenomeSet()
11053 slp = SeqLocFindNext (mappedloc, NULL); in CheckMultiIntervalGene()
11056 slp = SeqLocFindNext (mappedloc, slp); in CheckMultiIntervalGene()
18922 for (slp = SeqLocFindNext (loc, NULL); slp != NULL; slp = SeqLocFindNext (loc, slp)) { in GetFeatsInGaps()
21019 slp = SeqLocFindNext (location, NULL); in LocationIsFar()
21057 slp = SeqLocFindNext (location, slp); in LocationIsFar()
23987 …for (slp = SeqLocFindNext (sfp->location, NULL); slp != NULL; slp = SeqLocFindNext (sfp->location,… in ValidateImpFeat()
26803 for (tmp = SeqLocFindNext (slp, NULL); tmp != NULL; tmp = SeqLocFindNext (slp, tmp)) { in ValidateAnticodon()
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H A Dasn2gnb3.c5488 for (slpx = SeqLocFindNext (slp, NULL); slpx != NULL; slpx = SeqLocFindNext (slp, slpx)) { in GetSourcesOnBioseq()
5737 loc = SeqLocFindNext (slp, NULL); in GetSourcesOnSeg()
5922 slp = SeqLocFindNext (location, NULL); in CleanupPackedSeqInt()
5932 slp = SeqLocFindNext (location, slp); in CleanupPackedSeqInt()
6997 slp = SeqLocFindNext (sfp->location, NULL); in GetFeatsOnBioseq()
7005 slp = SeqLocFindNext (sfp->location, slp); in GetFeatsOnBioseq()
7368 slp = SeqLocFindNext (sfp->location, NULL); in GetFeatsOnBioseq()
7374 slp = SeqLocFindNext (sfp->location, slp); in GetFeatsOnBioseq()
7685 loc = SeqLocFindNext (slp, NULL); in GetFeatsOnSeg()
H A Dasn2gnb5.c3399 slp = SeqLocFindNext (loc, NULL); in AddReferenceToGbseq()
3409 slp = SeqLocFindNext (loc, slp); in AddReferenceToGbseq()
3743 slp = SeqLocFindNext (loc, NULL); in FormatReferenceBlock()
3745 nextslp = SeqLocFindNext (loc, slp); in FormatReferenceBlock()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dblast_dust.c190 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDustEx()
201 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDustEx()
H A Ddust.c255 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDust()
266 while ((next_slp = SeqLocFindNext (this_slp, next_slp)) != NULL) in SeqLocDust()
H A Dtoporg.c6398 loc = SeqLocFindNext (slp, NULL); in AddSegToDeltaSeq()
6897 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual()
6902 slp = SeqLocFindNext (&vn, slp); in SegSeqNullToVirtual()
6908 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual()
6942 slp = SeqLocFindNext (&vn, NULL); in SegSeqNullToVirtual()
6949 slp = SeqLocFindNext (&vn, slp); in SegSeqNullToVirtual()
7006 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual()
7016 slp = SeqLocFindNext (&vn, slp); in ForceSegSeqNullToVirtual()
7022 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual()
7056 slp = SeqLocFindNext (&vn, NULL); in ForceSegSeqNullToVirtual()
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/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dsalpanel.c2869 slp = SeqLocFindNext (location, NULL); in MergeAdjacentSeqLocIntervals()
2970 slp = SeqLocFindNext (location, slp); in MergeAdjacentSeqLocIntervals()
3313 master_subloc = SeqLocFindNext (master_location, NULL); in GetPropagatedSublocations()
3363 master_subloc = SeqLocFindNext (master_location, master_subloc); in GetPropagatedSublocations()
3539 slp = SeqLocFindNext (location, NULL); in ExtendLocToEnd()
3542 slp = SeqLocFindNext (location, slp); in ExtendLocToEnd()
3582 slp = SeqLocFindNext (sfp->location, NULL); in TruncateCDS()
3603 slp = SeqLocFindNext (sfp->location, slp); in TruncateCDS()
4180 slp = SeqLocFindNext (sfp->location, NULL); in DoFixCDS()
4190 slp = SeqLocFindNext (sfp->location, slp); in DoFixCDS()
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H A Ddlgutil1.c4183 slp = SeqLocFindNext (&vn, NULL); in FillInProducts()
4198 slp = SeqLocFindNext (&vn, slp); in FillInProducts()
4224 slp = SeqLocFindNext (&vn, NULL); in SegmentedEntryList()
4227 slp = SeqLocFindNext (&vn, slp); in SegmentedEntryList()
4282 tmp_slp = SeqLocFindNext (slp, NULL); in FindLastStopForSeqId()
4294 tmp_slp = SeqLocFindNext (slp, tmp_slp); in FindLastStopForSeqId()
4323 tmp_slp = SeqLocFindNext (slp, NULL); in CorrectIntervalEditorSeqIdEnum()
4361 tmp_slp = SeqLocFindNext (slp, tmp_slp); in CorrectIntervalEditorSeqIdEnum()
4575 slp = SeqLocFindNext (location, NULL); in SeqLocPtrToIntervalPage()
4581 next = SeqLocFindNext (location, slp); in SeqLocPtrToIntervalPage()
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/dports/biology/ncbi-toolkit/ncbi/access/
H A Dpmfapi.c3131 loc = SeqLocFindNext (slp, NULL); in LookupSegments()
3185 while ((slp = SeqLocFindNext (&vn, slp)) != NULL) { in LookupBioseqs()
3210 while ((slp = SeqLocFindNext (sfp->location, slp)) != NULL) { in LookupLocations()
3225 while ((slp = SeqLocFindNext (sfp->product, slp)) != NULL) { in LookupProducts()

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