| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blastkar.c | 1339 sbp->ambiguous_res[sbp->ambig_occupy] = SeqMapTableConvert(smtp, ambiguous_res); in BlastScoreSetAmbigRes()
1344 …sbp->ambiguous_res[sbp->ambig_occupy] = ncbi4na_to_blastna[SeqMapTableConvert(smtp, ambiguous_res)… in BlastScoreSetAmbigRes()
1349 sbp->ambiguous_res[sbp->ambig_occupy] = SeqMapTableConvert(smtp, ambiguous_res); in BlastScoreSetAmbigRes()
1927 ch = SeqMapTableConvert(smtp, *lp); in BlastScoreBlkMatRead()
1972 ch = SeqMapTableConvert(smtp, ch); in BlastScoreBlkMatRead()
2532 residues[index] = SeqMapTableConvert(smtp, STD_AMINO_ACID_FREQS[index].ch); in BlastGetStdAlphabet()
5064 index1 = SeqMapTableConvert(smtp, i); in BlastMatrixToTxMatrix()
5065 index2 = SeqMapTableConvert(smtp, j); in BlastMatrixToTxMatrix()
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| H A D | gapxdrop.c | 2068 pro_seq[i] = SeqMapTableConvert(smtp, query[i]); in PerformGappedAlignmentWithTraceback()
2071 dnap_seq[i] = SeqMapTableConvert(smtp, subject[i]); in PerformGappedAlignmentWithTraceback()
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| H A D | toporg.c | 4948 aa = SeqMapTableConvert (smtp, trp->aa); in IsCodonCorrect()
5008 residue = SeqMapTableConvert (smtp, residue); in CorrectTrnaCodons()
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| H A D | blast.c | 6949 … translation[(index3<<4) + (index2<<2) + index1] = SeqMapTableConvert(smtp, genetic_code[codon]); in GetPrivatTranslationTable()
6954 … translation[(index1<<4) + (index2<<2) + index3] = SeqMapTableConvert(smtp, genetic_code[codon]); in GetPrivatTranslationTable()
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| H A D | blastutl.c | 6613 new_residue = SeqMapTableConvert(smtp, residue); in GetTranslation()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_seq.c | 598 SeqMapTableConvert(smtp, gen_code_eaa[index]); in BLAST_GeneticCodeFind()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | sequtil.h | 232 NLM_EXTERN Uint1 SeqMapTableConvert(SeqMapTablePtr smtp, Uint1 residue);
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| H A D | asn2gnb4.c | 640 new_residue = SeqMapTableConvert (smtp, residue); in Get3LetterSymbol()
7384 residue = SeqMapTableConvert (smtp, residue); in FormatFeatureBlockEx()
7585 residue = SeqMapTableConvert (smtp, residue); in FormatFeatureBlockEx()
7758 aa = SeqMapTableConvert (smtp, trna->aa); in FormatFeatureBlockEx()
7771 aa = SeqMapTableConvert (smtp, trna->aa); in FormatFeatureBlockEx()
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| H A D | seqport.c | 1884 residue = SeqMapTableConvert(spp->smtp, residue); in SeqPortGetResidue()
2162 ch = SeqMapTableConvert (smtp, residue); in MapNa8ByteToIUPACString()
4001 residue = SeqMapTableConvert(smtp, codon[i]); in IndexForCodon()
4043 residue = SeqMapTableConvert(smtp, residue); in CodonForIndex()
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| H A D | sequtil.c | 927 byte_tmp = SeqMapTableConvert(smtp, residue_from); in BSConvertSeq()
1015 BSPutByte(from, SeqMapTableConvert(smtp, char_to)); in BSRebuildDNA()
2150 NaI2Set[ch = (Uint1)SeqMapTableConvert(smtp, (Uint1)i)] = Na42Set[i]; in InitNaI2Table()
2182 NLM_EXTERN Uint1 SeqMapTableConvert (SeqMapTablePtr smtp, Uint1 from) in SeqMapTableConvert() function
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| H A D | jzcoll.c | 400 stdaa_res = SeqMapTableConvert(smtp, t_res); in load_text()
421 stdaa_res = SeqMapTableConvert(smtp, m_res); in load_text()
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| H A D | tofasta.c | 2599 if((uch = SeqMapTableConvert(smtp, byte_from)) != in FastaReadSequenceInternalEx()
2603 out_buff[out_index] = SeqMapTableConvert(smtp, '*'); in FastaReadSequenceInternalEx()
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| H A D | asn2ff3.c | 504 new_residue = SeqMapTableConvert(smtp, residue); in Get3LetterSymbol()
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| H A D | sqnutil1.c | 3974 aa = SeqMapTableConvert (smtp, trp->aa); in CleanupTrna()
12793 residue = SeqMapTableConvert (smtp, residue); in IsFeatureCommentRedundant()
12892 aa = SeqMapTableConvert (smtp, trp->aa); in IsFeatureCommentRedundant()
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| H A D | txalign.c | 2080 stdaa_res = SeqMapTableConvert(smtp, t_res); in load_align_sum_for_DenseSeg()
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| H A D | sqnutil2.c | 22476 aa = SeqMapTableConvert (smtp, trp->aa); in GetAaFromtRNA()
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| H A D | valid.c | 24939 aa = SeqMapTableConvert (smtp, trp->aa);
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| H A D | sqnutil3.c | 2614 residue = SeqMapTableConvert (smtp, residue); in InitGcCodons()
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| H A D | macroapi.c | 7214 aa = SeqMapTableConvert (smtp, trna->aa); in GetTrnaProductString()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | blastall.c | 1409 index1 = SeqMapTableConvert(smtp, i); in BlastMatrixConvert()
1410 index2 = SeqMapTableConvert(smtp, j); in BlastMatrixConvert()
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| H A D | cleanasn.c | 998 aacode = SeqMapTableConvert (smtp, trp->aa); in GetFeatureProductName()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/cblast/ |
| H A D | cblastutil.c | 267 m_res = SeqMapTableConvert(smtp, m_res); in cblast_load_align_sum_for_DenseSeg()
277 stdaa_res = SeqMapTableConvert(smtp, t_res); in cblast_load_align_sum_for_DenseSeg()
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| /dports/biology/ncbi-toolkit/ncbi/object/ |
| H A D | objfdef.c | 1230 aacode = SeqMapTableConvert(smtp, trp->aa); in FeatDefLabelContent()
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | cdrgn.c | 2015 aa = SeqMapTableConvert (smtp, (Uint1) list->aa.value.intvalue); in CodeBreakPtrToCodeBreakDialog()
2021 aa = SeqMapTableConvert (smtp, (Uint1) list->aa.value.intvalue); in CodeBreakPtrToCodeBreakDialog()
6466 aa = SeqMapTableConvert (smtp, trna->aa); in RnaRefPtrToRnaPage()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/cdd/ |
| H A D | cddutil.c | 4143 cbuffer[i] = (Char) SeqMapTableConvert(smtp, buffer[i]); in CddConsensus()
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