| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | salpstat.c | 325 SeqPortSeek(spp_1, 0, SEEK_SET); in DenseSegStats()
326 SeqPortSeek(spp_2, 0, SEEK_SET); in DenseSegStats()
345 SeqPortSeek(spp_1,start_1,SEEK_SET); in DenseSegStats()
352 SeqPortSeek(spp_2,start_2,SEEK_SET); in DenseSegStats()
778 SeqPortSeek(spp_1, 0, SEEK_SET); in SeqAlignWindowStats()
779 SeqPortSeek(spp_2, 0, SEEK_SET); in SeqAlignWindowStats()
849 SeqPortSeek(spp_1, start_1, SEEK_SET); in SeqAlignWindowStats()
851 SeqPortSeek(spp_2, bsp_2->length-1 - stop_2, SEEK_SET); in SeqAlignWindowStats()
853 SeqPortSeek(spp_2, start_2, SEEK_SET); in SeqAlignWindowStats()
2004 SeqPortSeek(spp_1, offset_1, SEEK_SET); in SeqAlignWindowScoreFN()
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| H A D | codon.c | 149 SeqPortSeek(spp, seq_pos, SEEK_SET); in aa_to_codon()
510 SeqPortSeek(spp, 0, SEEK_SET); in print_protein_for_cds()
600 SeqPortSeek(spp, aa, SEEK_SET); in print_protein_for_cds()
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| H A D | seqport.c | 713 SeqPortSeek(spp, 0, SEEK_SET); in SeqPortSet_do_virtualEx()
1109 SeqPortSeek(spp, 0, SEEK_SET); in SeqPortNew()
1222 SeqPortSeek(spp, 0, SEEK_SET); in SeqPortNewByLoc()
1455 if (! SeqPortSeek(curspp, curpos, SEEK_SET)) in SeqPortSeek()
1660 SeqPortSeek(spp, -1, SEEK_END); /* go to end */ in SeqPortGetResidue()
1836 SeqPortSeek(spp->curr, 0, in SeqPortGetResidue()
1839 SeqPortSeek(spp->curr, -1, in SeqPortGetResidue()
1856 SeqPortSeek(spp->curr, 0, in SeqPortGetResidue()
1859 SeqPortSeek(spp->curr, -1, in SeqPortGetResidue()
3796 SeqPortSeek(spp, pos, SEEK_SET);
[all …]
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| H A D | seqport.h | 162 NLM_EXTERN Int2 SeqPortSeek PROTO((SeqPortPtr spp, Int4 offset, Int2 origin));
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| H A D | jzcoll.c | 329 SeqPortSeek(spp, length-1 -i, SEEK_SET); in load_text()
342 SeqPortSeek(spp, length-5, SEEK_SET); in load_text()
348 SeqPortSeek(spp, 4-i, SEEK_SET); in load_text()
384 SeqPortSeek(spp, length-1, SEEK_SET); in load_text()
440 SeqPortSeek(spp, length -1 - s_len, SEEK_SET); in load_text()
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| H A D | pgppop.c | 1446 SeqPortSeek(spp, seek, SEEK_SET); in DDV_GetSequenceFromParaG()
3300 SeqPortSeek(spp, seek, SEEK_SET); in DDV_ReadSeqGivenSpp()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | mts.c | 359 SeqPortSeek (spp, start, SEEK_SET); in Main()
361 SeqPortSeek (spp, gbsp->bsp->length-stop-1, SEEK_SET); in Main()
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| H A D | twop.c | 377 SeqPortSeek (sppT, startT, SEEK_SET); in Main()
378 SeqPortSeek (sppP, startP, SEEK_SET); in Main()
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| H A D | dst.c | 257 SeqPortSeek (spp, 0, SEEK_SET); in Main()
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| H A D | epi.c | 288 SeqPortSeek (spp, 0, SEEK_SET); in Main()
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| H A D | ccp.c | 347 SeqPortSeek (spp, 0, SEEK_SET); in Main()
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| H A D | sigme.c | 261 SeqPortSeek (spp, 0, SEEK_SET); in Main()
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| H A D | twopv.c | 599 SeqPortSeek (sppT, startT, SEEK_SET); in TwopProc()
600 SeqPortSeek (sppP, startP, SEEK_SET); in TwopProc()
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | aacomp.c | 39 SeqPortSeek (spp, i, SEEK_SET); in AAC()
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| H A D | seqpcc.c | 63 SeqPortSeek (spp, i, SEEK_SET); in PCC()
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| H A D | seqmtrx.c | 272 SeqPortSeek (spp, start, SEEK_SET); in GetSeqChunk()
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| H A D | ingenext.c | 3173 SeqPortSeek(spp_gen, gstart-start, SEEK_SET); in Ing_MismatchProc()
3181 SeqPortSeek(spp_mrna, mstart-start, SEEK_SET); in Ing_MismatchProc()
4080 SeqPortSeek(gspp, begin_at, SEEK_SET); in Ing_DoReplace()
4098 SeqPortSeek(mspp, mreal - mstart - nleft, SEEK_SET); in Ing_DoReplace()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | tfuns.c | 868 SeqPortSeek(spp, ir, SEEK_SET); in find_orf()
994 SeqPortSeek (spp, loop, SEEK_SET); in find_orf_from_circle()
1168 SeqPortSeek (spp, pos-spec2+3, SEEK_SET); /* redundant check */ in find_orf_from_circle()
1178 SeqPortSeek (spp, pos, SEEK_SET); in find_orf_from_circle()
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| H A D | dust.c | 439 SeqPortSeek (spp, iseg, SEEK_SET); in wo()
505 SeqPortSeek (spp, icur, SEEK_SET); in dusttripfind()
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| H A D | urkfltr.c | 296 SeqPortSeek (spp, this_start, SEEK_SET); in FilterSeqPort()
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| H A D | urkpcc.c | 298 SeqPortSeek (spp, start, SEEK_SET); in PredictCCSeqPort()
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| H A D | urkdust.c | 566 SeqPortSeek (spp, this_start, SEEK_SET); in DustSeqPort()
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| H A D | salptool.c | 1224 SeqPortSeek(s_spp, dsp->lens[i], SEEK_CUR); in is_bad_align()
1234 SeqPortSeek(m_spp, dsp->lens[i], SEEK_CUR); in is_bad_align()
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| H A D | urkptpf.c | 91 SeqPortSeek (spp, start, SEEK_SET); in GetSeqChunk()
2272 SeqPortSeek (spp, 0, SEEK_SET); in CalcMolWt()
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| H A D | urkcnsrt.c | 216 SeqPortSeek (spp, 0, SEEK_SET); in Condone()
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