Searched refs:Sequence_stdout (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | sequence.h | 129 Sequence_stdout (T this, bool uppercasep, int wraplength, bool trimmedp);
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| H A D | chimera.c | 850 Sequence_stdout(donor_genomicseg,/*uppercasep*/true,/*wraplength*/50,/*trimmedp*/false); in find_exonexon_fwd()
873 Sequence_stdout(acceptor_genomicseg,/*uppercasep*/true,/*wraplength*/50,/*trimmedp*/false); in find_exonexon_fwd()
987 Sequence_stdout(donor_genomicseg,/*uppercasep*/true,/*wraplength*/50,/*trimmedp*/false); in find_exonexon_rev()
1010 Sequence_stdout(acceptor_genomicseg,/*uppercasep*/true,/*wraplength*/50,/*trimmedp*/false); in find_exonexon_rev()
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| H A D | get-genome.c | 340 Sequence_stdout(genomicseg,uppercasep,wraplength,/*trimmedp*/false); in print_sequence()
414 Sequence_stdout(genomicseg,uppercasep,wraplength,/*trimmedp*/false); in print_sequence()
461 Sequence_stdout(genomicseg,uppercasep,wraplength,/*trimmedp*/false); in print_sequence()
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| H A D | sequence.c | 1453 debug(Sequence_stdout(new,/*uppercasep*/false,/*wraplength*/60,/*trimmedp*/false)); in Sequence_read()
1779 Sequence_stdout (T this, bool uppercasep, int wraplength, bool trimmedp) { in Sequence_stdout() function
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| H A D | gmap.c | 2750 debug2a(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_local()
2797 debug2a(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_local()
2864 debug2(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_local()
2911 debug2(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_local()
3193 debug2a(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_chimera()
3240 debug2a(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_chimera()
3302 debug2(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_chimera()
3349 debug2(Sequence_stdout(querysubseq,/*uppercasep*/true,wraplength,/*trimmedp*/true)); in check_for_chimera()
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| /dports/biology/gmap/gmap-2020-09-12/ |
| H A D | ChangeLog | 1528 Sequence_stdout
5817 * gmap.c: Fixed debugging statements to use Sequence_stdout instead of
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