| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sample/app/lds/ |
| H A D | lds2_sample.cpp | 204 sel.SetByProduct(true); in Run()
217 sel.SetByProduct(false); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/wgs/test/ |
| H A D | test_wgs_loader.cpp | 1745 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1778 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1812 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1845 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1880 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1914 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1951 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
1985 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
2021 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
2051 CFeat_CI feat_it(bsh, SAnnotSelector().SetByProduct()); in BOOST_AUTO_TEST_CASE()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/lds2/test/ |
| H A D | test_lds2.cpp | 396 sel.SetByProduct(true); in Main()
552 sel.SetByProduct(true); in Run()
561 sel.SetByProduct(false); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | validerror_bioseqset.cpp | 210 .SetByProduct()); in IsMrnaProductInGPS()
225 sel.SetByProduct(true); in IsCDSProductInGPS()
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| H A D | validatorp.cpp | 2365 sel.SetByProduct() in GetCDSGivenProduct()
2375 sel.SetByProduct(); in GetCDSGivenProduct()
2406 sel.SetByProduct() .SetLimitTSE(limit); in GetmRNAGivenProduct()
2415 sel.SetByProduct(); in GetmRNAGivenProduct()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/ |
| H A D | test_annot_ci.cpp | 337 sel.SetByProduct(); in x_InitSelector()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
| H A D | annot_selector.hpp | 191 SAnnotSelector& SetByProduct(bool byProduct = true) in SetByProduct() function
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
| H A D | annot_selector.hpp | 191 SAnnotSelector& SetByProduct(bool byProduct = true) in SetByProduct() function
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/test/ |
| H A D | test_helper.cpp | 1216 for ( CFeat_CI feat_it(scope, loc, SAnnotSelector().SetByProduct()); in ProcessBioseq()
1254 .SetByProduct()); in ProcessBioseq()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | indexer.cpp | 2259 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
2263 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
2268 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
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| H A D | sequence.cpp | 2463 .SetByProduct().SetLimitTSE(bsh.GetTSE_Handle())); in GetMappedCDSForProduct()
2468 .SetByProduct().ExcludeTSE(bsh.GetTSE_Handle())); in GetMappedCDSForProduct()
2494 CFeat_CI fi(bsh, SAnnotSelector(CSeqFeatData::e_Prot).SetByProduct()); in GetPROTForProduct()
2519 as.SetByProduct(); in GetmRNAForProduct()
2536 .SetByProduct()); in GetMappedmRNAForProduct()
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| H A D | feature.cpp | 1575 sel.SetByProduct(link.m_ByProduct); in sx_GetParentByOverlap()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | indexer.cpp | 2238 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
2242 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
2247 .SetByProduct().SetLimitTSE(m_Bsh.GetTSE_Handle())); in GetFeatureForProduct()
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| H A D | sequence.cpp | 2463 .SetByProduct().SetLimitTSE(bsh.GetTSE_Handle())); in GetMappedCDSForProduct()
2468 .SetByProduct().ExcludeTSE(bsh.GetTSE_Handle())); in GetMappedCDSForProduct()
2494 CFeat_CI fi(bsh, SAnnotSelector(CSeqFeatData::e_Prot).SetByProduct()); in GetPROTForProduct()
2519 as.SetByProduct(); in GetmRNAForProduct()
2536 .SetByProduct()); in GetMappedmRNAForProduct()
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| H A D | feature.cpp | 1575 sel.SetByProduct(link.m_ByProduct); in sx_GetParentByOverlap()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | gather_items.cpp | 3984 sel.SetByProduct().SetResolveDepth(0); in x_GatherFeaturesIdx()
4116 sel.SetByProduct().SetResolveDepth(0); in x_GatherFeatures()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | gather_items.cpp | 3984 sel.SetByProduct().SetResolveDepth(0); in x_GatherFeaturesIdx()
4116 sel.SetByProduct().SetResolveDepth(0); in x_GatherFeatures()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/objmgr/demo/ |
| H A D | objmgr_demo.cpp | 1842 base_sel.SetByProduct(by_product); in Run()
|