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Searched refs:SetOptionsHandle (Results 1 – 14 of 14) sorted by relevance

/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/
H A Dbl2seq.hpp118 CBlastOptionsHandle& SetOptionsHandle();
278 CBl2Seq::SetOptionsHandle() in SetOptionsHandle() function in CBl2Seq
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/
H A Dbl2seq.hpp118 CBlastOptionsHandle& SetOptionsHandle();
278 CBl2Seq::SetOptionsHandle() in SetOptionsHandle() function in CBl2Seq
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dtraceback_unit_test.cpp287 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
423 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
551 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
688 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
921 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
922 blaster.SetOptionsHandle().SetQueryCovHspPerc(5); in BOOST_AUTO_TEST_CASE()
1028 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
1029 blaster.SetOptionsHandle().SetMaxHspsPerSubject(k_num_hsps_filtered); in BOOST_AUTO_TEST_CASE()
H A Drmblast_traceback_unit_test.cpp285 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_FIXTURE_TEST_SUITE()
H A Dbl2seq_unit_test.cpp1704 blaster.SetOptionsHandle() = *opts; in BOOST_AUTO_TEST_CASE()
1714 blaster.SetOptionsHandle() = *opts; in BOOST_AUTO_TEST_CASE()
1956 blaster.SetOptionsHandle().SetMaxNumHspPerSequence(total_num_hsps); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dtraceback_unit_test.cpp287 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
423 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
551 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
688 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
921 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
922 blaster.SetOptionsHandle().SetQueryCovHspPerc(5); in BOOST_AUTO_TEST_CASE()
1028 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_AUTO_TEST_CASE()
1029 blaster.SetOptionsHandle().SetMaxHspsPerSubject(k_num_hsps_filtered); in BOOST_AUTO_TEST_CASE()
H A Drmblast_traceback_unit_test.cpp285 blaster.SetOptionsHandle().SetDbLength(subj_length); in BOOST_FIXTURE_TEST_SUITE()
H A Dbl2seq_unit_test.cpp1704 blaster.SetOptionsHandle() = *opts; in BOOST_AUTO_TEST_CASE()
1714 blaster.SetOptionsHandle() = *opts; in BOOST_AUTO_TEST_CASE()
1956 blaster.SetOptionsHandle().SetMaxNumHspPerSequence(total_num_hsps); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/
H A Dblast_args.hpp1421 void SetOptionsHandle(CRef<CBlastOptionsHandle> opts_hndl) { in SetOptionsHandle() function in CBlastAppArgs
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/
H A Dblast_args.hpp1421 void SetOptionsHandle(CRef<CBlastOptionsHandle> opts_hndl) { in SetOptionsHandle() function in CBlastAppArgs
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/
H A Dblast_app_util.cpp547 cmdline_args->SetOptionsHandle(opts_hndl); in s_ImportSearchStrategy()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/contig_assembly/
H A Dcontig_assembly.cpp156 dynamic_cast<CBlastNucleotideOptionsHandle&>(bl2seq.SetOptionsHandle()); in Blastn()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/
H A Dblast_app_util.cpp563 cmdline_args->SetOptionsHandle(opts_hndl); in s_ImportSearchStrategy()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/splign/
H A Dsplign_app.cpp871 Blast.SetOptionsHandle() = *m_BlastOptionsHandle; in x_GetBl2SeqHits()