Searched refs:SinglePosSequence (Results 1 – 17 of 17) sorted by relevance
/dports/biology/wise/wise2.4.1/src/dnaindex/ |
H A D | singleseqspace.h | 22 #define SinglePosSequence Wise2_SinglePosSequence macro 33 SinglePosSequence ** sns; 36 SinglePosSequence * last_accessed; 69 SinglePosSequence * Wise2_lookup_Sequence_SinglePosSpace(SinglePosSpace * space,long pos); 133 SinglePosSequence * Wise2_hard_link_SinglePosSequence(SinglePosSequence * obj); 146 SinglePosSequence * Wise2_SinglePosSequence_alloc(void); 161 SinglePosSequence * Wise2_free_SinglePosSequence(SinglePosSequence * obj); 176 boolean Wise2_add_SinglePosSpace(SinglePosSpace * obj,SinglePosSequence * add); 274 void Wise2_swap_SinglePosSpace(SinglePosSequence ** list,int i,int j) ; 276 …d Wise2_qsort_SinglePosSpace(SinglePosSequence ** list,int left,int right,int (*comp)(SinglePosSeq… [all …]
|
H A D | singleseqspace.c | 118 SinglePosSequence * a; in add_Sequence_SinglePosSpace() 119 SinglePosSequence * dummy; in add_Sequence_SinglePosSpace() 202 SinglePosSequence * hard_link_SinglePosSequence(SinglePosSequence * obj) in hard_link_SinglePosSequence() 222 SinglePosSequence * SinglePosSequence_alloc(void) in SinglePosSequence_alloc() 228 if((out=(SinglePosSequence *) ckalloc (sizeof(SinglePosSequence))) == NULL) { in SinglePosSequence_alloc() 255 SinglePosSequence * free_SinglePosSequence(SinglePosSequence * obj) in free_SinglePosSequence() 300 SinglePosSequence * temp; in swap_SinglePosSpace() 320 void qsort_SinglePosSpace(SinglePosSequence ** list,int left,int right,int (*comp)(SinglePosSequenc… in qsort_SinglePosSpace() argument 349 void sort_SinglePosSpace(SinglePosSpace * obj,int (*comp)(SinglePosSequence *, SinglePosSequence *)… in sort_SinglePosSpace() argument 377 …if( (obj->sns = (SinglePosSequence ** ) ckrealloc (obj->sns,sizeof(SinglePosSequence *)*len)) == N… in expand_SinglePosSpace() [all …]
|
H A D | singleseqspace.dy | 12 struct SinglePosSequence 20 SinglePosSequence ** sns !list 21 SinglePosSequence * last_accessed !link 36 SinglePosSequence * lookup_Sequence_SinglePosSpace(SinglePosSpace * space,long pos) 113 SinglePosSequence * a; 114 SinglePosSequence * dummy;
|
H A D | kmer_assembly_untangler.h | 39 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH]; 174 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions…
|
H A D | kmer_assembly_untangler.c | 385 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly() 386 SinglePosSequence * end_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly() 396 SinglePosSequence * transferred_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly() 644 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions… in lift_backward_tangled_tail()
|
H A D | kmer_assembly_untangler.dy | 25 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH] !link 403 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH]; 404 SinglePosSequence * end_pos[MAX_TANGLE_DEPTH]; 414 SinglePosSequence * transferred_pos[MAX_TANGLE_DEPTH]; 660 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions…
|
H A D | compressed_protein_index.c | 58 SinglePosSequence * pos; in lookup_CompressedProteinClient()
|
H A D | compressed_protein_index.dy | 86 SinglePosSequence * pos;
|
H A D | comparapath.c | 62 SinglePosSequence * query = NULL; in HSPset_from_ComparaIndex() 63 SinglePosSequence * target = NULL; in HSPset_from_ComparaIndex()
|
H A D | comparapath.dy | 139 SinglePosSequence * query = NULL; 140 SinglePosSequence * target = NULL;
|
H A D | eulerindex.dy | 342 SinglePosSequence * leftmost_sps[512]; 343 SinglePosSequence * rightmost_sps[512];
|
H A D | eulerindex.c | 302 SinglePosSequence * leftmost_sps[512]; in attempt_untangle_EulerPath() 303 SinglePosSequence * rightmost_sps[512]; in attempt_untangle_EulerPath()
|
H A D | kmer_assembly_error.c | 122 SinglePosSequence * sps; in resolve_forward_errors_KmerAssembly()
|
H A D | kmer_assembly_error.dy | 125 SinglePosSequence * sps;
|
/dports/biology/wise/wise2.4.1/src/dnaindex/assembly/ |
H A D | badkmer.c | 44 SinglePosSequence * sps; in main()
|
H A D | supertangle.dy | 42 SinglePosSequence * sps_a; 43 SinglePosSequence * sps_b;
|
H A D | graphtangle.dy | 195 SinglePosSequence * sps;
|