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Searched refs:SinglePosSequence (Results 1 – 17 of 17) sorted by relevance

/dports/biology/wise/wise2.4.1/src/dnaindex/
H A Dsingleseqspace.h22 #define SinglePosSequence Wise2_SinglePosSequence macro
33 SinglePosSequence ** sns;
36 SinglePosSequence * last_accessed;
69 SinglePosSequence * Wise2_lookup_Sequence_SinglePosSpace(SinglePosSpace * space,long pos);
133 SinglePosSequence * Wise2_hard_link_SinglePosSequence(SinglePosSequence * obj);
146 SinglePosSequence * Wise2_SinglePosSequence_alloc(void);
161 SinglePosSequence * Wise2_free_SinglePosSequence(SinglePosSequence * obj);
176 boolean Wise2_add_SinglePosSpace(SinglePosSpace * obj,SinglePosSequence * add);
274 void Wise2_swap_SinglePosSpace(SinglePosSequence ** list,int i,int j) ;
276 …d Wise2_qsort_SinglePosSpace(SinglePosSequence ** list,int left,int right,int (*comp)(SinglePosSeq…
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H A Dsingleseqspace.c118 SinglePosSequence * a; in add_Sequence_SinglePosSpace()
119 SinglePosSequence * dummy; in add_Sequence_SinglePosSpace()
202 SinglePosSequence * hard_link_SinglePosSequence(SinglePosSequence * obj) in hard_link_SinglePosSequence()
222 SinglePosSequence * SinglePosSequence_alloc(void) in SinglePosSequence_alloc()
228 if((out=(SinglePosSequence *) ckalloc (sizeof(SinglePosSequence))) == NULL) { in SinglePosSequence_alloc()
255 SinglePosSequence * free_SinglePosSequence(SinglePosSequence * obj) in free_SinglePosSequence()
300 SinglePosSequence * temp; in swap_SinglePosSpace()
320 void qsort_SinglePosSpace(SinglePosSequence ** list,int left,int right,int (*comp)(SinglePosSequenc… in qsort_SinglePosSpace() argument
349 void sort_SinglePosSpace(SinglePosSpace * obj,int (*comp)(SinglePosSequence *, SinglePosSequence *)… in sort_SinglePosSpace() argument
377 …if( (obj->sns = (SinglePosSequence ** ) ckrealloc (obj->sns,sizeof(SinglePosSequence *)*len)) == N… in expand_SinglePosSpace()
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H A Dsingleseqspace.dy12 struct SinglePosSequence
20 SinglePosSequence ** sns !list
21 SinglePosSequence * last_accessed !link
36 SinglePosSequence * lookup_Sequence_SinglePosSpace(SinglePosSpace * space,long pos)
113 SinglePosSequence * a;
114 SinglePosSequence * dummy;
H A Dkmer_assembly_untangler.h39 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH];
174 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions…
H A Dkmer_assembly_untangler.c385 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly()
386 SinglePosSequence * end_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly()
396 SinglePosSequence * transferred_pos[MAX_TANGLE_DEPTH]; in old_attempt_forward_untangle_KmerAssembly()
644 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions… in lift_backward_tangled_tail()
H A Dkmer_assembly_untangler.dy25 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH] !link
403 SinglePosSequence * start_pos[MAX_TANGLE_DEPTH];
404 SinglePosSequence * end_pos[MAX_TANGLE_DEPTH];
414 SinglePosSequence * transferred_pos[MAX_TANGLE_DEPTH];
660 …ai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions…
H A Dcompressed_protein_index.c58 SinglePosSequence * pos; in lookup_CompressedProteinClient()
H A Dcompressed_protein_index.dy86 SinglePosSequence * pos;
H A Dcomparapath.c62 SinglePosSequence * query = NULL; in HSPset_from_ComparaIndex()
63 SinglePosSequence * target = NULL; in HSPset_from_ComparaIndex()
H A Dcomparapath.dy139 SinglePosSequence * query = NULL;
140 SinglePosSequence * target = NULL;
H A Deulerindex.dy342 SinglePosSequence * leftmost_sps[512];
343 SinglePosSequence * rightmost_sps[512];
H A Deulerindex.c302 SinglePosSequence * leftmost_sps[512]; in attempt_untangle_EulerPath()
303 SinglePosSequence * rightmost_sps[512]; in attempt_untangle_EulerPath()
H A Dkmer_assembly_error.c122 SinglePosSequence * sps; in resolve_forward_errors_KmerAssembly()
H A Dkmer_assembly_error.dy125 SinglePosSequence * sps;
/dports/biology/wise/wise2.4.1/src/dnaindex/assembly/
H A Dbadkmer.c44 SinglePosSequence * sps; in main()
H A Dsupertangle.dy42 SinglePosSequence * sps_a;
43 SinglePosSequence * sps_b;
H A Dgraphtangle.dy195 SinglePosSequence * sps;