Searched refs:SplicingInstruction (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/mason2/ |
| H A D | mason_splicing.cpp | 82 struct SplicingInstruction struct
91 SplicingInstruction() : transcriptID(-1), beginPos(-1), endPos(-1), strand('.') in SplicingInstruction() argument
94 SplicingInstruction(int transcriptID, int beginPos, int endPos, char strand) : in SplicingInstruction() function
98 bool operator<(SplicingInstruction const & other) const in operator <() argument
106 bool differentTranscript(SplicingInstruction const & lhs, SplicingInstruction const & rhs) in differentTranscript()
179 std::vector<SplicingInstruction> splicingInstructions; in run()
203 … splicingInstructions.push_back(SplicingInstruction(transcriptIDs[i], record.beginPos, in run()
273 void _performSplicing(std::vector<SplicingInstruction> const & instructions, in _performSplicing()
279 typedef std::vector<SplicingInstruction>::const_iterator TIter; in _performSplicing()
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