Searched refs:Stage2_alloc_T (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage2.h | 5 typedef struct Stage2_alloc_T *Stage2_alloc_T; typedef
24 Stage2_alloc_free (Stage2_alloc_T *old);
25 extern Stage2_alloc_T
54 int genestrand, Stage2_alloc_T stage2_alloc, Oligoindex_array_T oligoindices,
62 Stage2_alloc_T stage2_alloc, double proceed_pctcoverage,
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| H A D | gmap.c | 1148 Sequence_T queryuc, Stage2_alloc_T stage2_alloc, in update_stage3middle_list()
1252 Sequence_T queryuc, Stage2_alloc_T stage2_alloc, in update_stage3list()
1440 Sequence_T usersegment, Stage2_alloc_T stage2_alloc, in stage3_from_usersegment()
1762 Sequence_T usersegment, Stage2_alloc_T stage2_alloc, in stage3_from_gregions()
2660 int queryntlength, Sequence_T usersegment, Stage2_alloc_T stage2_alloc, in check_for_local()
3620 int queryntlength, Stage2_alloc_T stage2_alloc, in check_middle_piece_local()
4058 Sequence_T usersegment, Stage2_alloc_T stage2_alloc, in apply_stage3()
4660 Stage2_alloc_T stage2_alloc; in worker_mpi_process()
4876 Stage2_alloc_T stage2_alloc; in single_thread()
5039 Stage2_alloc_T stage2_alloc; in worker_thread()
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| H A D | stage2.c | 256 struct Stage2_alloc_T { struct
269 Stage2_alloc_free (Stage2_alloc_T *old) { in Stage2_alloc_free() argument
281 Stage2_alloc_T
283 Stage2_alloc_T new = (Stage2_alloc_T) MALLOC(sizeof(*new)); in Stage2_alloc_new()
5829 int genestrand, Stage2_alloc_T stage2_alloc, Oligoindex_array_T oligoindices, in Stage2_scan()
6551 Stage2_alloc_T stage2_alloc, double proceed_pctcoverage, in Stage2_compute()
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