/dports/biology/diamond/diamond-2.0.13/src/dp/swipe/ |
H A D | stat_cell.h | 42 mask(blend(Sv(0), Sv(1), Sv(typename ::DISPATCH_ARCH::ScoreTraits<Sv>::Score(q)) == t)) in VectorIdMask() 44 const Sv mask; 50 Sv(), in ForwardCell() 55 Sv(v), in ForwardCell() 109 Sv(), 114 Sv(v), 219 FORCE_INLINE void update_stats(const Sv&, const Sv&, const Sv&, const DummyIdMask<Sv>&) { 224 const Sv one = Sv(1); 237 FORCE_INLINE void update_open(const Sv&, const Sv&) { 242 const Sv zero = Sv(), zero_mask = current == zero; [all …]
|
H A D | swipe_wrapper.cpp | 93 template<typename Sv> 104 template<typename Sv> 114 template<typename Sv, typename Cbs, typename Cfg> 140 template<typename Sv, typename It, typename Cfg> 149 template<typename Sv, typename It> 153 using Cfg = SwipeConfig<false, DummyRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe() 157 using Cfg = SwipeConfig<true, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe() 162 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe() 166 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, ForwardCell<Sv>, VectorIdMask<Sv>>; in dispatch_swipe() 172 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe() [all …]
|
H A D | cell_update.h | 24 template<typename Sv> 26 typedef typename ::DISPATCH_ARCH::ScoreTraits<Sv>::Score Score; 30 …std::fill(ptr, ptr + ::DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS, ::DISPATCH_ARCH::ScoreTraits<Sv>:… in store() 95 template<typename Sv> 96 FORCE_INLINE void set_max(Sv& v, const Sv& x) { in set_max() 104 template<typename Sv, typename Cell, typename Cbs, typename TraceMask, typename RowCounter, typenam… 106 const Sv& scores, in swipe_cell_update() 108 const Sv& gap_extension, in swipe_cell_update() 109 const Sv& gap_open, in swipe_cell_update() 112 Sv& best, in swipe_cell_update() [all …]
|
H A D | swipe.h | 91 template<typename Sv> 95 inline void set(typename ScoreTraits<Sv>::Vector seq) 97 assert(sizeof(data_) / sizeof(Sv) >= value_traits.alphabet_size); 99 data_[j] = Sv(j, seq); 102 inline const Sv& get(Letter i) const 126 typename ScoreTraits<Sv>::Score s[ScoreTraits<Sv>::CHANNELS]; 128 for (size_t j = 0; j < ScoreTraits<Sv>::CHANNELS; ++j) 130 data_[i] = load_sv<Sv>(s); 135 Sv data_[32];
|
H A D | full_matrix.h | 258 template<typename Sv, bool Traceback> 262 template<typename Sv> 263 struct SelectMatrix<Sv, true> { 264 using Type = TracebackVectorMatrix<Sv>; 267 template<typename Sv> 268 struct SelectMatrix<Sv, false> { 269 using Type = Matrix<Sv>;
|
/dports/math/sisl/SISL-SISL-4.6.0-44-g9114631/src/ |
H A D | s2543.c | 155 Sv[0] = 0.; 221 length = 1./sqrt(Sv[0]*Sv[0] + Sv[1]*Sv[1] + Sv[2]*Sv[2]); 230 (Su[1] - ratio*Sv[1])*(Su[1] - ratio*Sv[1]) + 231 (Su[2] - ratio*Sv[2])*(Su[2] - ratio*Sv[2])); 240 (Sv[1] - ratio*Su[1])*(Sv[1] - ratio*Su[1]) + 241 (Sv[2] - ratio*Su[2])*(Sv[2] - ratio*Su[2])); 266 length = 1./sqrt(Sv[0]*Sv[0] + Sv[1]*Sv[1] + Sv[2]*Sv[2]); 275 (Su[1] - ratio*Sv[1])*(Su[1] - ratio*Sv[1]) + 276 (Su[2] - ratio*Sv[2])*(Su[2] - ratio*Sv[2])); 285 (Sv[1] - ratio*Su[1])*(Sv[1] - ratio*Su[1]) + [all …]
|
H A D | s1773.c | 444 register double *S, *Su, *Sv; local 460 Sv = Su + idim; 467 l2 = s6length(Sv,idim,&kstat); 468 ang = s6ang(Su,Sv,idim); 481 *cdiff2 = s6scpr(PS,Sv,idim)/l2*l2; 498 t2 = s6scpr(Su,Sv,idim) ; /* - s6scpr(PS,Suv,idim);*/ 499 t3 = s6scpr(Sv,Sv,idim) ; /* - s6scpr(PS,Svv,idim);*/ 501 t5 = s6scpr(PS,Sv,idim);
|
/dports/biology/diamond/diamond-2.0.13/src/dp/ |
H A D | scan_diags.cpp | 43 v1 += Sv(q); in scan_diags128() 46 v2 += Sv(q); in scan_diags128() 49 v3 += Sv(q); in scan_diags128() 52 v4 += Sv(q); in scan_diags128() 72 v1 += Sv(q); in scan_diags128() 75 v2 += Sv(q); in scan_diags128() 78 v3 += Sv(q); in scan_diags128() 81 v4 += Sv(q); in scan_diags128() 84 v5 += Sv(q); in scan_diags128() 87 v6 += Sv(q); in scan_diags128() [all …]
|
H A D | score_vector.h | 36 template<typename Sv> 89 template<typename Sv> 90 static Sv load_sv(const typename DISPATCH_ARCH::ScoreTraits<Sv>::Score* ptr) { 91 return Sv(ptr); 99 template<typename Sv> 100 static Sv blend_sv(const typename DISPATCH_ARCH::ScoreTraits<Sv>::Score a, const typename DISPATCH_… 101 const uint32_t CHANNELS = DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS; 102 alignas(32) typename DISPATCH_ARCH::ScoreTraits<Sv>::Score s[CHANNELS]; 108 return Sv(s); 138 template<typename Sv> [all …]
|
H A D | ungapped_simd.cpp | 33 using Sv = ScoreVector<int8_t, SCHAR_MIN>; in window_ungapped() typedef 35 constexpr int CHANNELS = ::DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS; in window_ungapped() 39 Sv score, best; in window_ungapped() 51 const Sv match(query_letter, subject_letters); in window_ungapped() 64 out[i] = ScoreTraits<Sv>::int_score(best2[d + i]); in window_ungapped()
|
/dports/www/hotcrp/hotcrp-2.102/ |
H A D | settings.php | 10 $Sv = SettingValues::make_request($Me, $Qreq); variable 11 $Sv->session_highlight(); 41 if ($Sv->execute()) { 42 $Sv->conf->save_session("settings_highlight", $Sv->message_field_map()); 43 if (!empty($Sv->changes)) 44 $Sv->conf->confirmMsg("Changes saved."); 46 $Sv->conf->warnMsg("No changes."); 47 $Sv->report(); 54 $Sv->crosscheck(); 56 $group_titles = $Sv->group_titles(); [all …]
|
/dports/finance/quantlib/QuantLib-1.20/ql/experimental/exoticoptions/ |
H A D | analyticholderextensibleoptionengine.cpp | 95 Real Sv = process_->x0(); in I1Call() local 115 Sv = Sv - yi / di; in I1Call() 124 return Sv; in I1Call() 129 Real Sv = process_->x0(); in I2Call() local 152 Sv = Sv - yi / di; in I2Call() 161 return Sv; in I2Call() 166 Real Sv = process_->x0(); in I1Put() local 183 Sv = Sv - yi / di; in I1Put() 192 return Sv; in I1Put() 213 Sv = Sv - yi / di; in I2Put() [all …]
|
H A D | analyticcomplexchooserengine.cpp | 110 Real Sv = process_->x0(); in CriticalValueChooser() local 112 BlackScholesCalculator bs=bsCalculator(Sv,Option::Call); in CriticalValueChooser() 116 bs=bsCalculator(Sv,Option::Put); in CriticalValueChooser() 126 Sv = Sv - yi / di; in CriticalValueChooser() 128 bs=bsCalculator(Sv,Option::Call); in CriticalValueChooser() 132 bs=bsCalculator(Sv,Option::Put); in CriticalValueChooser() 139 return Sv; in CriticalValueChooser()
|
/dports/biology/diamond/diamond-2.0.13/src/tools/ |
H A D | benchmark_swipe.cpp | 20 using Sv = ScoreVector<int8_t, SCHAR_MIN>; typedef 21 using Cell = ForwardCell<Sv>; 25 static Sv profile[32]; 26 static const size_t C = ScoreTraits<Sv>::CHANNELS; 30 auto id_mask = VectorIdMask<Sv>(0, Sv()); in update_row() 32 auto row_counter = VectorRowCounter<Sv>(0); in update_row() 33 Sv scores, gap_extension, gap_open, best; in update_row() 51 profile[i] = load_sv<Sv>(v); in swipe_cell_update()
|
/dports/cad/opencascade/opencascade-7.6.0/src/GeomFill/ |
H A D | GeomFill_BoundWithSurf.cxx | 104 gp_Vec Su, Sv; in Norm() local 105 myConS.GetSurface()->D1(x,y,P,Su,Sv); in Norm() 106 Su.Cross(Sv); in Norm() 135 gp_Vec Su, Sv, Suu, Suv, Svv; in D1Norm() local 136 myConS.GetSurface()->D2(x,y,P,Su,Sv, Suu, Svv, Suv); in D1Norm() 137 N = Su.Crossed(Sv); in D1Norm() 140 Standard_Real susu = Su.Dot(Su), susv = Su.Dot(Sv), svsv = Sv.Dot(Sv); in D1Norm() 156 gp_Vec temp2 = Sv.Multiplied(b); in D1Norm() 159 gp_Vec temp3 = Sv.Multiplied(d); in D1Norm()
|
/dports/cad/opencascade/opencascade-7.6.0/src/Plate/ |
H A D | Plate_GtoCConstraint.cxx | 152 vec(1) = Su*Sv; in Plate_GtoCConstraint() 159 vec(0) = Sv*Su; in Plate_GtoCConstraint() 160 vec(1) = Sv*Sv; in Plate_GtoCConstraint() 231 vec(1) = Su*Sv; in Plate_GtoCConstraint() 238 vec(0) = Sv*Su; in Plate_GtoCConstraint() 239 vec(1) = Sv*Sv; in Plate_GtoCConstraint() 303 vec(1) = Su*Sv; in Plate_GtoCConstraint() 310 vec(0) = Sv*Su; in Plate_GtoCConstraint() 311 vec(1) = Sv*Sv; in Plate_GtoCConstraint() 424 vec(1) = Su*Sv; in Plate_GtoCConstraint() [all …]
|
H A D | Plate_FreeGtoCConstraint.cxx | 181 gp_XYZ Sv = D1S.Dv+dv; in Plate_FreeGtoCConstraint() local 186 mat(1,0) = Sv*D1T.Du; in Plate_FreeGtoCConstraint() 187 mat(1,1) = Sv*D1T.Dv; in Plate_FreeGtoCConstraint() 193 vec(1) = Su*Sv; in Plate_FreeGtoCConstraint() 200 vec(0) = Sv*Su; in Plate_FreeGtoCConstraint() 201 vec(1) = Sv*Sv; in Plate_FreeGtoCConstraint() 323 mat(1,0) = Sv*D1T.Du; in Plate_FreeGtoCConstraint() 324 mat(1,1) = Sv*D1T.Dv; in Plate_FreeGtoCConstraint() 330 vec(1) = Su*Sv; in Plate_FreeGtoCConstraint() 337 vec(0) = Sv*Su; in Plate_FreeGtoCConstraint() [all …]
|
/dports/graphics/wings/libigl-2.1.0/python/py_igl/ |
H A D | py_signed_distance.cpp | 30 Eigen::VectorXd Sv; in __anon248f18e00102() local 32 igl::signed_distance(P, V, F, sign_type, Sv, Iv, C, N); in __anon248f18e00102() 33 S = Sv; in __anon248f18e00102() 76 Eigen::VectorXd Sv; in __anon248f18e00202() local 78 igl::signed_distance_pseudonormal(P, V, F, tree, FN, VN, EN, EMAPv, Sv, Iv, C, N); in __anon248f18e00202() 79 S = Sv; in __anon248f18e00202()
|
/dports/misc/p5-Geo-Address-Formatter/Geo-Address-Formatter-1.96/address-formatting/conf/abbreviations/ |
H A D | sk.yaml | 20 Svätého: Sv 21 Svätej: Sv
|
/dports/science/py-pyscf/pyscf-2.0.1/examples/ao2mo/ |
H A D | 22-rkb_no_pair_ints.py | 40 Sv = mo_pos_s[:,nocc:] 56 run((So, Sv, So, Sv), 'int2e_spsp1spsp2_spinor') 57 run((So, Sv, Lo, Lv), 'int2e_spsp1_spinor' ) 58 run((Lo, Lv, So, Sv), 'int2e_spsp2_spinor' )
|
/dports/science/grib_api/grib_api-1.28.0-Source/definitions/grib1/localConcepts/eswi/ |
H A D | landtype.table | 39 150 150 Effective dose [Sv] 40 151 151 Skin dose [Sv] 41 152 152 Thyroid dose [Sv] 42 153 153 Lung dose [Sv]
|
/dports/science/eccodes/eccodes-2.23.0-Source/definitions/grib1/localConcepts/eswi/ |
H A D | landtype.table | 39 150 150 Effective dose [Sv] 40 151 151 Skin dose [Sv] 41 152 152 Thyroid dose [Sv] 42 153 153 Lung dose [Sv]
|
/dports/games/gomoku/Gomoku-1.2.9/Swedish.lproj/ |
H A D | Localizable.strings | 7 "Set Difficulty Level..." = "S�tt Sv�righetsgrad..."; 55 "Level 5 (Difficult)" = "Niv� 5 (Sv�r)"; 57 "Choose Difficulty Level:" = "V�lj Sv�righetsgrad"; 59 "Difficulty level Panel" = "Sv�righetsgrad";
|
/dports/math/fcl/fcl-0.7.0/include/fcl/narrowphase/detail/primitive_shape_algorithm/ |
H A D | triangle_distance-inl.h | 175 Vector3<S> Sv[3]; in triDistance() local 179 Sv[0] = T1[1] - T1[0]; in triDistance() 180 Sv[1] = T1[2] - T1[1]; in triDistance() 181 Sv[2] = T1[0] - T1[2]; in triDistance() 210 segPoints(T1[i], Sv[i], T2[j], Tv[j], VEC, P, Q); in triDistance() 259 Sn = Sv[0].cross(Sv[1]); // Compute normal to T1 triangle in triDistance() 304 Z = Sn.cross(Sv[0]); in triDistance() 308 Z = Sn.cross(Sv[1]); in triDistance() 312 Z = Sn.cross(Sv[2]); in triDistance()
|
/dports/science/R-cran-Epi/Epi/inst/doc/ |
H A D | crisk.R | 108 Sv <- exp( -LD - LI - LO ) globalVar 112 rD <- cumsum(lD * mp(Sv)) * int 113 rI <- cumsum(lI * mp(Sv)) * int 114 rO <- cumsum(lO * mp(Sv)) * int 120 summary(rD + rI +rO + Sv) 122 cbind(summary(Sv + rD + rI + rO)) 129 zz <- mat2pol(cbind(rD,rI,rO,Sv), x = nd$tfd,
|