Home
last modified time | relevance | path

Searched refs:Sv (Results 1 – 25 of 2539) sorted by relevance

12345678910>>...102

/dports/biology/diamond/diamond-2.0.13/src/dp/swipe/
H A Dstat_cell.h42 mask(blend(Sv(0), Sv(1), Sv(typename ::DISPATCH_ARCH::ScoreTraits<Sv>::Score(q)) == t)) in VectorIdMask()
44 const Sv mask;
50 Sv(), in ForwardCell()
55 Sv(v), in ForwardCell()
109 Sv(),
114 Sv(v),
219 FORCE_INLINE void update_stats(const Sv&, const Sv&, const Sv&, const DummyIdMask<Sv>&) {
224 const Sv one = Sv(1);
237 FORCE_INLINE void update_open(const Sv&, const Sv&) {
242 const Sv zero = Sv(), zero_mask = current == zero;
[all …]
H A Dswipe_wrapper.cpp93 template<typename Sv>
104 template<typename Sv>
114 template<typename Sv, typename Cbs, typename Cfg>
140 template<typename Sv, typename It, typename Cfg>
149 template<typename Sv, typename It>
153 using Cfg = SwipeConfig<false, DummyRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe()
157 using Cfg = SwipeConfig<true, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe()
162 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe()
166 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, ForwardCell<Sv>, VectorIdMask<Sv>>; in dispatch_swipe()
172 using Cfg = SwipeConfig<false, VectorRowCounter<Sv>, Sv, DummyIdMask<Sv>>; in dispatch_swipe()
[all …]
H A Dcell_update.h24 template<typename Sv>
26 typedef typename ::DISPATCH_ARCH::ScoreTraits<Sv>::Score Score;
30 …std::fill(ptr, ptr + ::DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS, ::DISPATCH_ARCH::ScoreTraits<Sv>:… in store()
95 template<typename Sv>
96 FORCE_INLINE void set_max(Sv& v, const Sv& x) { in set_max()
104 template<typename Sv, typename Cell, typename Cbs, typename TraceMask, typename RowCounter, typenam…
106 const Sv& scores, in swipe_cell_update()
108 const Sv& gap_extension, in swipe_cell_update()
109 const Sv& gap_open, in swipe_cell_update()
112 Sv& best, in swipe_cell_update()
[all …]
H A Dswipe.h91 template<typename Sv>
95 inline void set(typename ScoreTraits<Sv>::Vector seq)
97 assert(sizeof(data_) / sizeof(Sv) >= value_traits.alphabet_size);
99 data_[j] = Sv(j, seq);
102 inline const Sv& get(Letter i) const
126 typename ScoreTraits<Sv>::Score s[ScoreTraits<Sv>::CHANNELS];
128 for (size_t j = 0; j < ScoreTraits<Sv>::CHANNELS; ++j)
130 data_[i] = load_sv<Sv>(s);
135 Sv data_[32];
H A Dfull_matrix.h258 template<typename Sv, bool Traceback>
262 template<typename Sv>
263 struct SelectMatrix<Sv, true> {
264 using Type = TracebackVectorMatrix<Sv>;
267 template<typename Sv>
268 struct SelectMatrix<Sv, false> {
269 using Type = Matrix<Sv>;
/dports/math/sisl/SISL-SISL-4.6.0-44-g9114631/src/
H A Ds2543.c155 Sv[0] = 0.;
221 length = 1./sqrt(Sv[0]*Sv[0] + Sv[1]*Sv[1] + Sv[2]*Sv[2]);
230 (Su[1] - ratio*Sv[1])*(Su[1] - ratio*Sv[1]) +
231 (Su[2] - ratio*Sv[2])*(Su[2] - ratio*Sv[2]));
240 (Sv[1] - ratio*Su[1])*(Sv[1] - ratio*Su[1]) +
241 (Sv[2] - ratio*Su[2])*(Sv[2] - ratio*Su[2]));
266 length = 1./sqrt(Sv[0]*Sv[0] + Sv[1]*Sv[1] + Sv[2]*Sv[2]);
275 (Su[1] - ratio*Sv[1])*(Su[1] - ratio*Sv[1]) +
276 (Su[2] - ratio*Sv[2])*(Su[2] - ratio*Sv[2]));
285 (Sv[1] - ratio*Su[1])*(Sv[1] - ratio*Su[1]) +
[all …]
H A Ds1773.c444 register double *S, *Su, *Sv; local
460 Sv = Su + idim;
467 l2 = s6length(Sv,idim,&kstat);
468 ang = s6ang(Su,Sv,idim);
481 *cdiff2 = s6scpr(PS,Sv,idim)/l2*l2;
498 t2 = s6scpr(Su,Sv,idim) ; /* - s6scpr(PS,Suv,idim);*/
499 t3 = s6scpr(Sv,Sv,idim) ; /* - s6scpr(PS,Svv,idim);*/
501 t5 = s6scpr(PS,Sv,idim);
/dports/biology/diamond/diamond-2.0.13/src/dp/
H A Dscan_diags.cpp43 v1 += Sv(q); in scan_diags128()
46 v2 += Sv(q); in scan_diags128()
49 v3 += Sv(q); in scan_diags128()
52 v4 += Sv(q); in scan_diags128()
72 v1 += Sv(q); in scan_diags128()
75 v2 += Sv(q); in scan_diags128()
78 v3 += Sv(q); in scan_diags128()
81 v4 += Sv(q); in scan_diags128()
84 v5 += Sv(q); in scan_diags128()
87 v6 += Sv(q); in scan_diags128()
[all …]
H A Dscore_vector.h36 template<typename Sv>
89 template<typename Sv>
90 static Sv load_sv(const typename DISPATCH_ARCH::ScoreTraits<Sv>::Score* ptr) {
91 return Sv(ptr);
99 template<typename Sv>
100 static Sv blend_sv(const typename DISPATCH_ARCH::ScoreTraits<Sv>::Score a, const typename DISPATCH_…
101 const uint32_t CHANNELS = DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS;
102 alignas(32) typename DISPATCH_ARCH::ScoreTraits<Sv>::Score s[CHANNELS];
108 return Sv(s);
138 template<typename Sv>
[all …]
H A Dungapped_simd.cpp33 using Sv = ScoreVector<int8_t, SCHAR_MIN>; in window_ungapped() typedef
35 constexpr int CHANNELS = ::DISPATCH_ARCH::ScoreTraits<Sv>::CHANNELS; in window_ungapped()
39 Sv score, best; in window_ungapped()
51 const Sv match(query_letter, subject_letters); in window_ungapped()
64 out[i] = ScoreTraits<Sv>::int_score(best2[d + i]); in window_ungapped()
/dports/www/hotcrp/hotcrp-2.102/
H A Dsettings.php10 $Sv = SettingValues::make_request($Me, $Qreq); variable
11 $Sv->session_highlight();
41 if ($Sv->execute()) {
42 $Sv->conf->save_session("settings_highlight", $Sv->message_field_map());
43 if (!empty($Sv->changes))
44 $Sv->conf->confirmMsg("Changes saved.");
46 $Sv->conf->warnMsg("No changes.");
47 $Sv->report();
54 $Sv->crosscheck();
56 $group_titles = $Sv->group_titles();
[all …]
/dports/finance/quantlib/QuantLib-1.20/ql/experimental/exoticoptions/
H A Danalyticholderextensibleoptionengine.cpp95 Real Sv = process_->x0(); in I1Call() local
115 Sv = Sv - yi / di; in I1Call()
124 return Sv; in I1Call()
129 Real Sv = process_->x0(); in I2Call() local
152 Sv = Sv - yi / di; in I2Call()
161 return Sv; in I2Call()
166 Real Sv = process_->x0(); in I1Put() local
183 Sv = Sv - yi / di; in I1Put()
192 return Sv; in I1Put()
213 Sv = Sv - yi / di; in I2Put()
[all …]
H A Danalyticcomplexchooserengine.cpp110 Real Sv = process_->x0(); in CriticalValueChooser() local
112 BlackScholesCalculator bs=bsCalculator(Sv,Option::Call); in CriticalValueChooser()
116 bs=bsCalculator(Sv,Option::Put); in CriticalValueChooser()
126 Sv = Sv - yi / di; in CriticalValueChooser()
128 bs=bsCalculator(Sv,Option::Call); in CriticalValueChooser()
132 bs=bsCalculator(Sv,Option::Put); in CriticalValueChooser()
139 return Sv; in CriticalValueChooser()
/dports/biology/diamond/diamond-2.0.13/src/tools/
H A Dbenchmark_swipe.cpp20 using Sv = ScoreVector<int8_t, SCHAR_MIN>; typedef
21 using Cell = ForwardCell<Sv>;
25 static Sv profile[32];
26 static const size_t C = ScoreTraits<Sv>::CHANNELS;
30 auto id_mask = VectorIdMask<Sv>(0, Sv()); in update_row()
32 auto row_counter = VectorRowCounter<Sv>(0); in update_row()
33 Sv scores, gap_extension, gap_open, best; in update_row()
51 profile[i] = load_sv<Sv>(v); in swipe_cell_update()
/dports/cad/opencascade/opencascade-7.6.0/src/GeomFill/
H A DGeomFill_BoundWithSurf.cxx104 gp_Vec Su, Sv; in Norm() local
105 myConS.GetSurface()->D1(x,y,P,Su,Sv); in Norm()
106 Su.Cross(Sv); in Norm()
135 gp_Vec Su, Sv, Suu, Suv, Svv; in D1Norm() local
136 myConS.GetSurface()->D2(x,y,P,Su,Sv, Suu, Svv, Suv); in D1Norm()
137 N = Su.Crossed(Sv); in D1Norm()
140 Standard_Real susu = Su.Dot(Su), susv = Su.Dot(Sv), svsv = Sv.Dot(Sv); in D1Norm()
156 gp_Vec temp2 = Sv.Multiplied(b); in D1Norm()
159 gp_Vec temp3 = Sv.Multiplied(d); in D1Norm()
/dports/cad/opencascade/opencascade-7.6.0/src/Plate/
H A DPlate_GtoCConstraint.cxx152 vec(1) = Su*Sv; in Plate_GtoCConstraint()
159 vec(0) = Sv*Su; in Plate_GtoCConstraint()
160 vec(1) = Sv*Sv; in Plate_GtoCConstraint()
231 vec(1) = Su*Sv; in Plate_GtoCConstraint()
238 vec(0) = Sv*Su; in Plate_GtoCConstraint()
239 vec(1) = Sv*Sv; in Plate_GtoCConstraint()
303 vec(1) = Su*Sv; in Plate_GtoCConstraint()
310 vec(0) = Sv*Su; in Plate_GtoCConstraint()
311 vec(1) = Sv*Sv; in Plate_GtoCConstraint()
424 vec(1) = Su*Sv; in Plate_GtoCConstraint()
[all …]
H A DPlate_FreeGtoCConstraint.cxx181 gp_XYZ Sv = D1S.Dv+dv; in Plate_FreeGtoCConstraint() local
186 mat(1,0) = Sv*D1T.Du; in Plate_FreeGtoCConstraint()
187 mat(1,1) = Sv*D1T.Dv; in Plate_FreeGtoCConstraint()
193 vec(1) = Su*Sv; in Plate_FreeGtoCConstraint()
200 vec(0) = Sv*Su; in Plate_FreeGtoCConstraint()
201 vec(1) = Sv*Sv; in Plate_FreeGtoCConstraint()
323 mat(1,0) = Sv*D1T.Du; in Plate_FreeGtoCConstraint()
324 mat(1,1) = Sv*D1T.Dv; in Plate_FreeGtoCConstraint()
330 vec(1) = Su*Sv; in Plate_FreeGtoCConstraint()
337 vec(0) = Sv*Su; in Plate_FreeGtoCConstraint()
[all …]
/dports/graphics/wings/libigl-2.1.0/python/py_igl/
H A Dpy_signed_distance.cpp30 Eigen::VectorXd Sv; in __anon248f18e00102() local
32 igl::signed_distance(P, V, F, sign_type, Sv, Iv, C, N); in __anon248f18e00102()
33 S = Sv; in __anon248f18e00102()
76 Eigen::VectorXd Sv; in __anon248f18e00202() local
78 igl::signed_distance_pseudonormal(P, V, F, tree, FN, VN, EN, EMAPv, Sv, Iv, C, N); in __anon248f18e00202()
79 S = Sv; in __anon248f18e00202()
/dports/misc/p5-Geo-Address-Formatter/Geo-Address-Formatter-1.96/address-formatting/conf/abbreviations/
H A Dsk.yaml20 Svätého: Sv
21 Svätej: Sv
/dports/science/py-pyscf/pyscf-2.0.1/examples/ao2mo/
H A D22-rkb_no_pair_ints.py40 Sv = mo_pos_s[:,nocc:]
56 run((So, Sv, So, Sv), 'int2e_spsp1spsp2_spinor')
57 run((So, Sv, Lo, Lv), 'int2e_spsp1_spinor' )
58 run((Lo, Lv, So, Sv), 'int2e_spsp2_spinor' )
/dports/science/grib_api/grib_api-1.28.0-Source/definitions/grib1/localConcepts/eswi/
H A Dlandtype.table39 150 150 Effective dose [Sv]
40 151 151 Skin dose [Sv]
41 152 152 Thyroid dose [Sv]
42 153 153 Lung dose [Sv]
/dports/science/eccodes/eccodes-2.23.0-Source/definitions/grib1/localConcepts/eswi/
H A Dlandtype.table39 150 150 Effective dose [Sv]
40 151 151 Skin dose [Sv]
41 152 152 Thyroid dose [Sv]
42 153 153 Lung dose [Sv]
/dports/games/gomoku/Gomoku-1.2.9/Swedish.lproj/
H A DLocalizable.strings7 "Set Difficulty Level..." = "S�tt Sv�righetsgrad...";
55 "Level 5 (Difficult)" = "Niv� 5 (Sv�r)";
57 "Choose Difficulty Level:" = "V�lj Sv�righetsgrad";
59 "Difficulty level Panel" = "Sv�righetsgrad";
/dports/math/fcl/fcl-0.7.0/include/fcl/narrowphase/detail/primitive_shape_algorithm/
H A Dtriangle_distance-inl.h175 Vector3<S> Sv[3]; in triDistance() local
179 Sv[0] = T1[1] - T1[0]; in triDistance()
180 Sv[1] = T1[2] - T1[1]; in triDistance()
181 Sv[2] = T1[0] - T1[2]; in triDistance()
210 segPoints(T1[i], Sv[i], T2[j], Tv[j], VEC, P, Q); in triDistance()
259 Sn = Sv[0].cross(Sv[1]); // Compute normal to T1 triangle in triDistance()
304 Z = Sn.cross(Sv[0]); in triDistance()
308 Z = Sn.cross(Sv[1]); in triDistance()
312 Z = Sn.cross(Sv[2]); in triDistance()
/dports/science/R-cran-Epi/Epi/inst/doc/
H A Dcrisk.R108 Sv <- exp( -LD - LI - LO ) globalVar
112 rD <- cumsum(lD * mp(Sv)) * int
113 rI <- cumsum(lI * mp(Sv)) * int
114 rO <- cumsum(lO * mp(Sv)) * int
120 summary(rD + rI +rO + Sv)
122 cbind(summary(Sv + rD + rI + rO))
129 zz <- mat2pol(cbind(rD,rI,rO,Sv), x = nd$tfd,

12345678910>>...102