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Searched refs:TEntryList (Results 1 – 25 of 25) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/
H A Dasci_blk.h49 void StripSerialNumbers(TEntryList& seq_entries);
50 void PackEntries(TEntryList& seq_entries);
77 void BuildBioSegHeader(ParserPtr pp, TEntryList& entries,
85 void EntryCheckDivCode(TEntryList& seq_entries, ParserPtr pp);
91 bool fta_EntryCheckGBBlock(TEntryList& seq_entries);
93 void fta_sort_descr(TEntryList& seq_entries);
94 void fta_sort_seqfeat_cit(TEntryList& seq_entries);
96 void fta_set_strandedness(TEntryList& seq_entries);
H A Dnucprot.h76 void CheckDupDates(TEntryList& seq_entries);
77 void ProcNucProt(ParserPtr pp, TEntryList& seq_entries, GeneRefFeats& gene_refs);
H A Dasci_blk.cpp2126 TEntryList::iterator next_seq = entries.begin(); in CheckSegPub()
2447 NON_CONST_ITERATE(TEntryList, entry, entries) in GetSegSetDblink()
2610 ITERATE(TEntryList, entry, entries) in SrchSegSeqMol()
2638 ITERATE(TEntryList, entry, entries) in SrchSegLength()
3538 bool fta_EntryCheckGBBlock(TEntryList& seq_entries) in fta_EntryCheckGBBlock()
3619 void fta_sort_descr(TEntryList& seq_entries) in fta_sort_descr()
3689 void fta_sort_seqfeat_cit(TEntryList& seq_entries) in fta_sort_seqfeat_cit()
3797 void fta_set_strandedness(TEntryList& seq_entries) in fta_set_strandedness()
3821 ITERATE(TEntryList, entry, seq_entries) in SwissProtIDPresent()
3872 void StripSerialNumbers(TEntryList& seq_entries) in StripSerialNumbers()
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H A Dutilfeat.cpp347 static void GetTaxnameName(TEntryList& seq_entries, std::vector<std::string>& names) in GetTaxnameName()
351 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in GetTaxnameName()
474 static void CheckDelGbblockSource(TEntryList& seq_entries, std::vector<std::string>& names) in CheckDelGbblockSource()
476 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in CheckDelGbblockSource()
488 void MaybeCutGbblockSource(TEntryList& seq_entries) in MaybeCutGbblockSource()
H A Dfcleanup.cpp172 NON_CONST_ITERATE(TEntryList, entry, bio_set.SetSeq_set()) in MoveAnnotToTop()
207 NON_CONST_ITERATE(TEntryList, entry, bio_set.SetSeq_set()) in MoveBiomolToTop()
219 ITERATE(TEntryList, entry, parts->GetSeq_set()) in MoveBiomolToTop()
243 NON_CONST_ITERATE(TEntryList, entry, parts->SetSeq_set()) in MoveBiomolToTop()
465 void FinalCleanup(TEntryList& seq_entries) in FinalCleanup()
481 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in FinalCleanup()
H A Dfcleanup.h46 void FinalCleanup(TEntryList& seq_entries);
H A Dcitation.cpp344 void ProcessCitations(TEntryList& seq_entries) in ProcessCitations()
348 ITERATE(TEntryList, entry, seq_entries) in ProcessCitations()
369 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in ProcessCitations()
H A Dgb_ascii.h49 void CheckFeatSeqLoc(TEntryList& seq_entries);
H A Dutilfeat.h52 void MaybeCutGbblockSource(TEntryList& seq_entries);
H A Dcitation.h65 void ProcessCitations(TEntryList& seq_entries);
H A Dftanet.h52 void fta_find_pub_explore(ParserPtr pp, TEntryList& seq_entries);
H A Dutilref.h56 void DealWithGenes(TEntryList& seq_entries, ParserPtr pp);
H A Dnucprot.cpp252 static void GetGcode(TEntryList& seq_entries, ParserPtr pp) in GetGcode()
255 ITERATE(TEntryList, entry, seq_entries) in GetGcode()
293 static void AssignBioseqSetLevel(TEntryList& seq_entries) in AssignBioseqSetLevel()
296 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in AssignBioseqSetLevel()
2607 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in FindCd()
2619 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in FindCd()
2744 static void BuildProtBioseqSet(ProtBlkPtr pbp, TEntryList& entries) in BuildProtBioseqSet()
2835 NON_CONST_ITERATE(TEntryList, entry, bio_set.SetSeq_set()) in FixDupDates()
2892 NON_CONST_ITERATE(TEntryList, entry, bio_set.SetSeq_set()) in FixEmblUpdateDates()
2929 void CheckDupDates(TEntryList& seq_entries) in CheckDupDates()
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H A Dftablock.h92 TEntryList entries; /* a ProtRef SeqEntry list, link to above
H A Dgb_ascii.cpp1594 TEntryList seq_entries; in GenBankAscii()
2172 static void FindFeatSeqLoc(TEntryList& seq_entries, TSeqFeatList& feats) in FindFeatSeqLoc()
2174 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in FindFeatSeqLoc()
2209 static objects::CBioseq_set* GetParts(TEntryList& seq_entries) in GetParts()
2211 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in GetParts()
2234 void CheckFeatSeqLoc(TEntryList& seq_entries) in CheckFeatSeqLoc()
H A Dftanet.cpp620 using TEntryList = list<CRef<CSeq_entry>>; typedef in CFindPub
621 void Apply(TEntryList& entries);
908 void fta_find_pub_explore(ParserPtr pp, TEntryList& seq_entries) in fta_find_pub_explore()
H A Dgenref.cpp2871 static void CheckGene(TEntryList& seq_entries, ParserPtr pp, GeneRefFeats& gene_refs) in CheckGene()
2901 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in CheckGene()
3158 static void GeneQuals(TEntryList& seq_entries, const Char* acnum, GeneRefFeats& gene_refs) in GeneQuals()
3176 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in GeneQuals()
3253 void DealWithGenes(TEntryList& seq_entries, ParserPtr pp) in DealWithGenes()
3258 ITERATE(TEntryList, entry, seq_entries) in DealWithGenes()
3268 NON_CONST_ITERATE(TEntryList, entry, seq_entries) in DealWithGenes()
H A Dftamain.cpp402 TEntryList& entries = seq_submit->SetData().SetEntrys(); in MakeSeqSubmit()
935 TEntryList& fta_parse_buf(Parser& pp, const char* buf) in fta_parse_buf()
H A Dprf_ascii.cpp966 TEntryList entries; in PrfPrepareEntry()
H A Dem_ascii.cpp303 static bool OutputEmblAsn(bool seq_long, ParserPtr pp, TEntryList& seq_entries) in OutputEmblAsn()
2490 TEntryList seq_entries; in EmblAscii()
H A Dxm_ascii.cpp1356 TEntryList seq_entries; in XMLAscii()
H A Dpir_ascii.cpp2434 TEntryList entries; in ind2asn()
H A Dsp_ascii.cpp5323 TEntryList entries; in SpPrepareEntry()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/flatfile/
H A Dfta_parse_buf.h48 typedef std::list<CRef<objects::CSeq_entry>> TEntryList; typedef
50 TEntryList& fta_parse_buf(Parser& pp, const char* buf);
H A Dflatfile_parse_info.hpp57 using TEntryList = list<CRef<objects::CSeq_entry>>; typedef
115 TEntryList entries;