Searched refs:TIntervalIter (Results 1 – 5 of 5) sorted by relevance
537 typedef typename Iterator<TIntervalStore>::Type TIntervalIter; in compareAlignedReadsToReference() typedef551 TIntervalIter witRecordsBegin = begin(witStore.intervals, Standard()); in compareAlignedReadsToReference()552 TIntervalIter witRecordsEnd = witRecordsBegin; in compareAlignedReadsToReference()
120 typedef Iterator<String<ContigInterval> >::Type TIntervalIter; in intervalizeErrorCurves() typedef121 for (TIntervalIter it2 = begin(*it); it2 != end(*it); ++it2) { in intervalizeErrorCurves()
42 typedef typename Iterator<TIntervals >::Type TIntervalIter; in getIdsForRead() typedef50 TIntervalIter itI = begin(alignIntervals); in getIdsForRead()51 TIntervalIter itIEnd = end(alignIntervals); in getIdsForRead()
69 typedef typename Iterator<TIntervals >::Type TIntervalIter; in getIdsForRead() typedef77 TIntervalIter itI = begin(alignIntervals); in getIdsForRead()78 TIntervalIter itIEnd = end(alignIntervals); in getIdsForRead()
321 typedef Iterator<String<ContigInterval> >::Type TIntervalIter; in intervalizeAndDumpErrorCurves() typedef322 for (TIntervalIter it2 = begin(*it); it2 != end(*it); ++it2) in intervalizeAndDumpErrorCurves()