| /dports/biology/py-pysam/pysam-0.18.0/htslib/htscodecs/htscodecs/ |
| H A D | rANS_static.c | 48 #define TOTFREQ (1<<TF_SHIFT) macro
123 if (fsum < TOTFREQ) { in rans_compress_O0()
124 F[M] += TOTFREQ-fsum; in rans_compress_O0()
129 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
282 if (x + F > TOTFREQ) in rans_uncompress_O0()
305 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
485 if (t2 < TOTFREQ) { in rans_compress_O1()
486 F[i][M] += TOTFREQ-t2; in rans_compress_O1()
772 F = TOTFREQ; in rans_uncompress_O1()
778 if (x + F > TOTFREQ) in rans_uncompress_O1()
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| H A D | rANS_static4x16pr.c | 82 #define TOTFREQ (1<<TF_SHIFT) macro
414 if (max_val > TOTFREQ) in rans_compress_O0_4x16()
415 max_val = TOTFREQ; in rans_compress_O0_4x16()
426 if (normalise_freq(F, fsum, TOTFREQ) < 0) in rans_compress_O0_4x16()
497 unsigned char R[TOTFREQ];
519 uint16_t sfreq[TOTFREQ+32]; in rans_uncompress_O0_4x16()
520 uint16_t sbase[TOTFREQ+32]; // faster to use 32-bit on clang in rans_uncompress_O0_4x16()
521 uint8_t ssym [TOTFREQ+64]; // faster to use 16-bit on clang in rans_uncompress_O0_4x16()
535 normalise_freq_shift(F, fsum, TOTFREQ); in rans_uncompress_O0_4x16()
540 if (F[j] > TOTFREQ - x) in rans_uncompress_O0_4x16()
[all …]
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| /dports/biology/htslib/htslib-1.14/htscodecs/htscodecs/ |
| H A D | rANS_static.c | 48 #define TOTFREQ (1<<TF_SHIFT) macro
123 if (fsum < TOTFREQ) { in rans_compress_O0()
124 F[M] += TOTFREQ-fsum; in rans_compress_O0()
129 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
282 if (x + F > TOTFREQ) in rans_uncompress_O0()
305 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
485 if (t2 < TOTFREQ) { in rans_compress_O1()
486 F[i][M] += TOTFREQ-t2; in rans_compress_O1()
772 F = TOTFREQ; in rans_uncompress_O1()
778 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| H A D | rANS_static4x16pr.c | 82 #define TOTFREQ (1<<TF_SHIFT) macro
414 if (max_val > TOTFREQ) in rans_compress_O0_4x16()
415 max_val = TOTFREQ; in rans_compress_O0_4x16()
426 if (normalise_freq(F, fsum, TOTFREQ) < 0) in rans_compress_O0_4x16()
497 unsigned char R[TOTFREQ];
519 uint16_t sfreq[TOTFREQ+32]; in rans_uncompress_O0_4x16()
520 uint16_t sbase[TOTFREQ+32]; // faster to use 32-bit on clang in rans_uncompress_O0_4x16()
521 uint8_t ssym [TOTFREQ+64]; // faster to use 16-bit on clang in rans_uncompress_O0_4x16()
535 normalise_freq_shift(F, fsum, TOTFREQ); in rans_uncompress_O0_4x16()
540 if (F[j] > TOTFREQ - x) in rans_uncompress_O0_4x16()
[all …]
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| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | rANS_static.c | 52 #define TOTFREQ (1<<TF_SHIFT) macro
105 if (fsum < TOTFREQ) { in rans_compress_O0()
106 F[M] += TOTFREQ-fsum; in rans_compress_O0()
111 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
203 unsigned char R[TOTFREQ];
243 if (x + F > TOTFREQ) in rans_uncompress_O0()
262 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
423 if (t2 < TOTFREQ) { in rans_compress_O1()
622 F = TOTFREQ; in rans_uncompress_O1()
627 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | rANS_static.c | 52 #define TOTFREQ (1<<TF_SHIFT) macro
105 if (fsum < TOTFREQ) { in rans_compress_O0()
106 F[M] += TOTFREQ-fsum; in rans_compress_O0()
111 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
203 unsigned char R[TOTFREQ];
243 if (x + F > TOTFREQ) in rans_uncompress_O0()
262 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
423 if (t2 < TOTFREQ) { in rans_compress_O1()
622 F = TOTFREQ; in rans_uncompress_O1()
627 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | rANS_static.c | 52 #define TOTFREQ (1<<TF_SHIFT) macro
105 if (fsum < TOTFREQ) { in rans_compress_O0()
106 F[M] += TOTFREQ-fsum; in rans_compress_O0()
111 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
242 if (x + F > TOTFREQ) in rans_uncompress_O0()
261 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
422 if (t2 < TOTFREQ) { in rans_compress_O1()
423 F[i][M] += TOTFREQ-t2; in rans_compress_O1()
615 F = TOTFREQ; in rans_uncompress_O1()
620 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | rANS_static.c | 52 #define TOTFREQ (1<<TF_SHIFT) macro
105 if (fsum < TOTFREQ) { in rans_compress_O0()
106 F[M] += TOTFREQ-fsum; in rans_compress_O0()
111 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
242 if (x + F > TOTFREQ) in rans_uncompress_O0()
261 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
422 if (t2 < TOTFREQ) { in rans_compress_O1()
423 F[i][M] += TOTFREQ-t2; in rans_compress_O1()
615 F = TOTFREQ; in rans_uncompress_O1()
620 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
| H A D | rANS_static.c | 54 #define TOTFREQ (1<<TF_SHIFT) macro
107 if (fsum < TOTFREQ) { in rans_compress_O0()
108 F[M] += TOTFREQ-fsum; in rans_compress_O0()
113 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
205 unsigned char R[TOTFREQ];
250 if (x + F > TOTFREQ) in rans_uncompress_O0()
269 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
433 if (t2 < TOTFREQ) { in rans_compress_O1()
637 F = TOTFREQ; in rans_uncompress_O1()
642 if (x + F > TOTFREQ) in rans_uncompress_O1()
[all …]
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| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | rANS_static.c | 11 #define TOTFREQ (1<<TF_SHIFT) macro
569 if (fsum < TOTFREQ) { in rans_compress_O0()
570 F[M] += TOTFREQ-fsum; in rans_compress_O0()
575 F[M] -= fsum-TOTFREQ; in rans_compress_O0()
709 if (F > TOTFREQ) in rans_uncompress_O0()
732 if (x < TOTFREQ-1 || x > TOTFREQ) in rans_uncompress_O0()
892 if (t2 < TOTFREQ) { in rans_compress_O1()
893 F[i][M] += TOTFREQ-t2; in rans_compress_O1()
1099 F = TOTFREQ; in rans_uncompress_O1()
1105 if (x + F > TOTFREQ) in rans_uncompress_O1()
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| H A D | rANS_static4x16pr.c | 431 #define TOTFREQ (1<<TF_SHIFT) macro
860 if (normalise_freq(F, in_size, TOTFREQ) < 0) in rans_compress_O0_4x16()
936 unsigned char R[TOTFREQ];
948 uint16_t sfreq[TOTFREQ+32]; in rans_uncompress_O0_4x16()
949 uint16_t sbase[TOTFREQ+32]; // faster to use 32-bit on clang in rans_uncompress_O0_4x16()
950 uint8_t ssym [TOTFREQ+64]; // faster to use 16-bit on clang in rans_uncompress_O0_4x16()
968 if (x + F[j] > TOTFREQ) in rans_uncompress_O0_4x16()
979 if (x != TOTFREQ) in rans_uncompress_O0_4x16()
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