Searched refs:TPosH (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_scout.h | 173 template <typename TDPCell, typename TPosH, typename TPosV, typename TSizeCurrInit, typename TSizeN…
176 TPosH const & originNextMatrixH,
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| H A D | banded_chain_alignment_impl.h | 983 typedef typename Position<TSeqH>::Type TPosH; in _computeGapArea() typedef
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea()
1288 typedef typename Position<TSequenceH>::Type TPosH; in _computeAlignment() typedef
1329 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment()
1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_scout.h | 173 template <typename TDPCell, typename TPosH, typename TPosV, typename TSizeCurrInit, typename TSizeN…
176 TPosH const & originNextMatrixH,
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| H A D | banded_chain_alignment_impl.h | 983 typedef typename Position<TSeqH>::Type TPosH; in _computeGapArea() typedef
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea()
1288 typedef typename Position<TSequenceH>::Type TPosH; in _computeAlignment() typedef
1329 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment()
1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_scout.h | 172 template <typename TDPCell, typename TPosH, typename TPosV, typename TSizeCurrInit, typename TSizeN…
175 TPosH const & originNextMatrixH,
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| H A D | banded_chain_alignment_impl.h | 893 typedef typename Position<TSeqH>::Type TPosH; in _computeGapArea() typedef
912 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea()
1195 typedef typename Position<TSequenceH>::Type TPosH; in _computeAlignment() typedef
1236 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment()
1246 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_matrix_navigator_trace_matrix.h | 575 typename TPosH,
579 TPosH const horizontalCoordinate, in toGlobalPosition()
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| H A D | dp_matrix.h | 598 typename TPosH,
602 TPosH const horizontalCoordinate,
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_matrix_navigator_trace_matrix.h | 575 typename TPosH,
579 TPosH const horizontalCoordinate, in toGlobalPosition()
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| H A D | dp_matrix.h | 598 typename TPosH,
602 TPosH const horizontalCoordinate,
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