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Searched refs:TRowsPosition (Results 1 – 12 of 12) sorted by relevance

/dports/biology/seqan1/seqan-1.3.1/seqan/file/
H A Dfile_format_cgviz.h81 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in _writeImpl() typedef
83 TRowsPosition row_count = length(rows(align)); in _writeImpl()
88 for(TRowsPosition i=0;i<row_count-1;++i) { in _writeImpl()
89 for(TRowsPosition j=i+1;j<row_count;++j) { in _writeImpl()
H A Dfile_format_fasta_align.h274 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in _writeImpl() typedef
276 TRowsPosition row_count = length(rows(align)); in _writeImpl()
278 for(TRowsPosition i=0;i<row_count;++i) { in _writeImpl()
/dports/biology/seqan1/seqan-1.3.1/seqan/align/
H A Dalign_base.h467 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition;
470 TRowsPosition row_count = length(rows(source));
498 for(TRowsPosition i=0;i<2*row_count-1;++i) {
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A Dalign_base.h484 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition;
487 TRowsPosition row_count = length(rows(source));
518 for (TRowsPosition i = 0; i < 2 * row_count - 1; ++i)
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A Dalign_base.h484 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition;
487 TRowsPosition row_count = length(rows(source));
518 for (TRowsPosition i = 0; i < 2 * row_count - 1; ++i)
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Dalign_base.h484 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition;
487 TRowsPosition row_count = length(rows(source));
518 for (TRowsPosition i = 0; i < 2 * row_count - 1; ++i)
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/micro_razers/
H A DoutputFormat.h255 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
257 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
260 for (TRowsPosition i = 0; i < row_count; ++i) in dumpAlignment()
/dports/biology/seqan1/seqan-1.3.1/apps/splazers/
H A DoutputFormat.h194 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in getErrorDistribution() typedef
255 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
257 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
260 for (TRowsPosition i = 0; i < row_count; ++i) in dumpAlignment()
580 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
583 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
588 for(TRowsPosition i=0;i<row_count;++i) { in dumpAlignment()
/dports/biology/seqan1/seqan-1.3.1/apps/razers/
H A DoutputFormat.h194 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in getErrorDistribution() typedef
255 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
257 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
260 for (TRowsPosition i = 0; i < row_count; ++i) in dumpAlignment()
/dports/biology/seqan1/seqan-1.3.1/apps/razers2/
H A DoutputFormat.h227 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in getErrorDistribution() typedef
296 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
299 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
304 for(TRowsPosition i=0;i<row_count;++i) { in dumpAlignment()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/
H A DoutputFormat.h255 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
257 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
260 for (TRowsPosition i = 0; i < row_count; ++i) in dumpAlignment()
582 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
585 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
590 for(TRowsPosition i=0;i<row_count;++i) { in dumpAlignment()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/
H A DoutputFormat.h259 typedef typename Position<typename Rows<TAlign>::Type>::Type TRowsPosition; in dumpAlignment() typedef
261 TRowsPosition row_count = length(rows(source)); in dumpAlignment()
264 for (TRowsPosition i = 0; i < row_count; ++i) in dumpAlignment()