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Searched refs:TStr (Results 1 – 25 of 237) sorted by relevance

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/dports/biology/bowtie/bowtie-1.3.1/
H A Dalphabet.h15 template <typename TStr>
29 template<typename TStr>
30 static inline TStr reverseComplement(const TStr& s) { in reverseComplement()
31 TStr s_rc; in reverseComplement()
48 template<typename TStr>
74 template<typename TStr>
75 static inline TStr reverseCopy(const TStr& s) { in reverseCopy()
76 TStr s_rc; in reverseCopy()
91 template <typename TStr>
93 dollarLt(const TStr& l, const TStr& r) { in dollarLt()
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H A Dblockwise_sa.h54 template<typename TStr>
57 BlockwiseSA(const TStr& __text,
165 template<typename TStr>
182 template<typename TStr>
441 template<typename TStr>
492 template<typename TStr>
494 const TStr* t;
502 template<typename TStr>
505 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in BinarySorting_worker()
539 template<typename TStr>
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H A Ddiff_sample.h520 template<typename TStr>
642 template <typename TStr>
664 template <typename TStr>
697 template <typename TStr>
760 template <typename TStr>
762 const TStr& host, in suffixSameUpTo()
777 template<typename TStr>
789 template<typename TStr>
792 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in VSorting_worker()
827 template <typename TStr>
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H A Dsequence_io.h50 template <typename TStr>
52 EList<TStr>& ss,
74 ss.push_back(TStr(new char[seqlens[i]], seqlens[i])); // add a new empty string to the end
121 template <typename TStr>
123 EList<TStr>& ss,
129 readSequenceFile<TStr>(infiles[i], ss, baseCutoff, seqCutoff, reverse);
138 template <typename TStr>
140 EList<TStr>& ss,
145 readSequenceFiles<TStr>(infiles, ss, i, seqCutoff, reverse);
/dports/biology/hisat2/hisat2-2.2.1/
H A Drepeat_builder.h249 template<typename TStr>
256 template<typename TStr>
263 template<typename TStr>
267 template<typename TStr>
532 template<typename TStr>
539 template<typename TStr>
543 template<typename TStr>
844 template<typename TStr>
848 RepeatBuilder(TStr& s,
939 TStr& s_;
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H A Dblockwise_sa.h65 template<typename TStr>
68 BlockwiseSA(const TStr& __text,
172 template<typename TStr>
189 template<typename TStr>
434 template<typename TStr>
436 const TStr& t = this->text(); in qsort()
488 template<typename TStr>
498 template<typename TStr>
501 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in BinarySorting_worker()
535 template<typename TStr>
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H A Ddiff_sample.h436 template<typename TStr>
558 template <typename TStr>
593 template <typename TStr>
656 template <typename TStr>
658 const TStr& host, in suffixSameUpTo()
673 template<typename TStr>
685 template<typename TStr>
688 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in VSorting_worker()
723 template <typename TStr>
893 template <typename TStr>
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H A Drepeat_kmer.h33 template<typename TStr>
40 get_minimizer(const TStr& seq, in get_minimizer()
61 get_minimizer(const TStr& seq, in get_minimizer()
118 get_kmer(const TStr& seq, in get_kmer()
145 TStr seq = ""; in get_string()
195 template<typename TStr>
196 bool isRepeat(const TStr& query, in isRepeat()
203 template<typename TStr>
237 template<typename TStr>
273 template<typename TStr>
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/dports/editors/cudatext/CudaText-1.151.0/atsynedit/atsynedit/
H A Datstringproc_htmlcolor.pas17 generic TATHtmlColorParser<TStr, TPChar> = class
24 class procedure SkipSpaces(const S: TStr; var N: integer);
25 class procedure SkipComma(const S: TStr; var N: integer);
26 class function SkipInt(const S: TStr; var N: integer): integer; in SkipInt()
27 class function SkipIntWithPercent(const S: TStr; var N: integer): integer; in SkipIntWithPercent()
28 class function SkipFloat(const S: TStr; var N: integer): integer; in SkipFloat()
157 class procedure TATHtmlColorParser.SkipSpaces(const S: TStr; var N: integer); inline;
163 class procedure TATHtmlColorParser.SkipComma(const S: TStr; var N: integer); inline;
169 class function TATHtmlColorParser.SkipInt(const S: TStr; var N: integer): integer;
183 class function TATHtmlColorParser.SkipIntWithPercent(const S: TStr; var N: integer): integer;
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/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dblockwise_sa.h67 template<typename TStr>
70 BlockwiseSA(const TStr& __text,
174 template<typename TStr>
193 template<typename TStr>
460 template<typename TStr>
514 template<typename TStr>
516 const TStr* t;
524 template<typename TStr>
532 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in operator()
568 template<typename TStr>
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H A Ddiff_sample.h446 template<typename TStr>
568 template <typename TStr>
603 template <typename TStr>
666 template <typename TStr>
668 const TStr& host, in suffixSameUpTo()
683 template<typename TStr>
695 template<typename TStr>
705 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in operator()
742 template <typename TStr>
914 template <typename TStr>
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/
H A Dgff_reader.hpp167 typedef CTempString TStr; typedef in CGFFReader
168 typedef vector<TStr> TStrVec;
185 virtual bool x_ParseStructuredComment(const TStr& line);
186 virtual void x_ParseDateComment(const TStr& date);
187 virtual void x_ParseTypeComment(const TStr& moltype,
188 const TStr& seqname);
191 virtual CRef<SRecord> x_ParseFeatureInterval(const TStr& line);
226 virtual CRef<CBioseq> x_ResolveID(const CSeq_id& id, const TStr& mol);
234 virtual bool x_IsLineUcscMetaInformation(const TStr&);
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/readers/
H A Dgff_reader.hpp167 typedef CTempString TStr; typedef in CGFFReader
168 typedef vector<TStr> TStrVec;
185 virtual bool x_ParseStructuredComment(const TStr& line);
186 virtual void x_ParseDateComment(const TStr& date);
187 virtual void x_ParseTypeComment(const TStr& moltype,
188 const TStr& seqname);
191 virtual CRef<SRecord> x_ParseFeatureInterval(const TStr& line);
226 virtual CRef<CBioseq> x_ResolveID(const CSeq_id& id, const TStr& mol);
234 virtual bool x_IsLineUcscMetaInformation(const TStr&);
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm12/llvm-project-12.0.1.src/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm11/llvm-11.0.1.src/tools/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm90/llvm-9.0.1.src/tools/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm10/llvm-10.0.1.src/tools/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/lang/rust/rustc-1.58.1-src/src/llvm-project/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/tinygo/tinygo-0.14.1/llvm-project/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()
/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/clang/test/PCH/
H A Dchain-friend-instantiation.cpp44 typedef TClass<std::s> TStr; typedef
47 TStr str;
51 unconst<TStr>(p); in crash()
58 const TStr p; in f()

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