/dports/biology/bowtie/bowtie-1.3.1/ |
H A D | alphabet.h | 15 template <typename TStr> 29 template<typename TStr> 30 static inline TStr reverseComplement(const TStr& s) { in reverseComplement() 31 TStr s_rc; in reverseComplement() 48 template<typename TStr> 74 template<typename TStr> 75 static inline TStr reverseCopy(const TStr& s) { in reverseCopy() 76 TStr s_rc; in reverseCopy() 91 template <typename TStr> 93 dollarLt(const TStr& l, const TStr& r) { in dollarLt() [all …]
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H A D | blockwise_sa.h | 54 template<typename TStr> 57 BlockwiseSA(const TStr& __text, 165 template<typename TStr> 182 template<typename TStr> 441 template<typename TStr> 492 template<typename TStr> 494 const TStr* t; 502 template<typename TStr> 505 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in BinarySorting_worker() 539 template<typename TStr> [all …]
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H A D | diff_sample.h | 520 template<typename TStr> 642 template <typename TStr> 664 template <typename TStr> 697 template <typename TStr> 760 template <typename TStr> 762 const TStr& host, in suffixSameUpTo() 777 template<typename TStr> 789 template<typename TStr> 792 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in VSorting_worker() 827 template <typename TStr> [all …]
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H A D | sequence_io.h | 50 template <typename TStr> 52 EList<TStr>& ss, 74 ss.push_back(TStr(new char[seqlens[i]], seqlens[i])); // add a new empty string to the end 121 template <typename TStr> 123 EList<TStr>& ss, 129 readSequenceFile<TStr>(infiles[i], ss, baseCutoff, seqCutoff, reverse); 138 template <typename TStr> 140 EList<TStr>& ss, 145 readSequenceFiles<TStr>(infiles, ss, i, seqCutoff, reverse);
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/dports/biology/hisat2/hisat2-2.2.1/ |
H A D | repeat_builder.h | 249 template<typename TStr> 256 template<typename TStr> 263 template<typename TStr> 267 template<typename TStr> 532 template<typename TStr> 539 template<typename TStr> 543 template<typename TStr> 844 template<typename TStr> 848 RepeatBuilder(TStr& s, 939 TStr& s_; [all …]
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H A D | blockwise_sa.h | 65 template<typename TStr> 68 BlockwiseSA(const TStr& __text, 172 template<typename TStr> 189 template<typename TStr> 434 template<typename TStr> 436 const TStr& t = this->text(); in qsort() 488 template<typename TStr> 498 template<typename TStr> 501 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in BinarySorting_worker() 535 template<typename TStr> [all …]
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H A D | diff_sample.h | 436 template<typename TStr> 558 template <typename TStr> 593 template <typename TStr> 656 template <typename TStr> 658 const TStr& host, in suffixSameUpTo() 673 template<typename TStr> 685 template<typename TStr> 688 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in VSorting_worker() 723 template <typename TStr> 893 template <typename TStr> [all …]
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H A D | repeat_kmer.h | 33 template<typename TStr> 40 get_minimizer(const TStr& seq, in get_minimizer() 61 get_minimizer(const TStr& seq, in get_minimizer() 118 get_kmer(const TStr& seq, in get_kmer() 145 TStr seq = ""; in get_string() 195 template<typename TStr> 196 bool isRepeat(const TStr& query, in isRepeat() 203 template<typename TStr> 237 template<typename TStr> 273 template<typename TStr> [all …]
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/dports/editors/cudatext/CudaText-1.151.0/atsynedit/atsynedit/ |
H A D | atstringproc_htmlcolor.pas | 17 generic TATHtmlColorParser<TStr, TPChar> = class 24 class procedure SkipSpaces(const S: TStr; var N: integer); 25 class procedure SkipComma(const S: TStr; var N: integer); 26 class function SkipInt(const S: TStr; var N: integer): integer; in SkipInt() 27 class function SkipIntWithPercent(const S: TStr; var N: integer): integer; in SkipIntWithPercent() 28 class function SkipFloat(const S: TStr; var N: integer): integer; in SkipFloat() 157 class procedure TATHtmlColorParser.SkipSpaces(const S: TStr; var N: integer); inline; 163 class procedure TATHtmlColorParser.SkipComma(const S: TStr; var N: integer); inline; 169 class function TATHtmlColorParser.SkipInt(const S: TStr; var N: integer): integer; 183 class function TATHtmlColorParser.SkipIntWithPercent(const S: TStr; var N: integer): integer; [all …]
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/dports/biology/bowtie2/bowtie2-2.4.4/ |
H A D | blockwise_sa.h | 67 template<typename TStr> 70 BlockwiseSA(const TStr& __text, 174 template<typename TStr> 193 template<typename TStr> 460 template<typename TStr> 514 template<typename TStr> 516 const TStr* t; 524 template<typename TStr> 532 BinarySortingParam<TStr>* param = (BinarySortingParam<TStr>*)vp; in operator() 568 template<typename TStr> [all …]
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H A D | diff_sample.h | 446 template<typename TStr> 568 template <typename TStr> 603 template <typename TStr> 666 template <typename TStr> 668 const TStr& host, in suffixSameUpTo() 683 template<typename TStr> 695 template<typename TStr> 705 VSortingParam<TStr>* param = (VSortingParam<TStr>*)vp; in operator() 742 template <typename TStr> 914 template <typename TStr> [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/ |
H A D | gff_reader.hpp | 167 typedef CTempString TStr; typedef in CGFFReader 168 typedef vector<TStr> TStrVec; 185 virtual bool x_ParseStructuredComment(const TStr& line); 186 virtual void x_ParseDateComment(const TStr& date); 187 virtual void x_ParseTypeComment(const TStr& moltype, 188 const TStr& seqname); 191 virtual CRef<SRecord> x_ParseFeatureInterval(const TStr& line); 226 virtual CRef<CBioseq> x_ResolveID(const CSeq_id& id, const TStr& mol); 234 virtual bool x_IsLineUcscMetaInformation(const TStr&);
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/readers/ |
H A D | gff_reader.hpp | 167 typedef CTempString TStr; typedef in CGFFReader 168 typedef vector<TStr> TStrVec; 185 virtual bool x_ParseStructuredComment(const TStr& line); 186 virtual void x_ParseDateComment(const TStr& date); 187 virtual void x_ParseTypeComment(const TStr& moltype, 188 const TStr& seqname); 191 virtual CRef<SRecord> x_ParseFeatureInterval(const TStr& line); 226 virtual CRef<CBioseq> x_ResolveID(const CSeq_id& id, const TStr& mol); 234 virtual bool x_IsLineUcscMetaInformation(const TStr&);
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm12/llvm-project-12.0.1.src/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm11/llvm-11.0.1.src/tools/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm90/llvm-9.0.1.src/tools/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm10/llvm-10.0.1.src/tools/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/lang/rust/rustc-1.58.1-src/src/llvm-project/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/tinygo/tinygo-0.14.1/llvm-project/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/clang/test/PCH/ |
H A D | chain-friend-instantiation.cpp | 44 typedef TClass<std::s> TStr; typedef 47 TStr str; 51 unconst<TStr>(p); in crash() 58 const TStr p; in f()
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