/dports/biology/seqan1/seqan-1.3.1/seqan/file/ |
H A D | stream.h | 48 template <typename TValue, typename TTraits> 53 template <typename TValue, typename TTraits> 58 template <typename TValue, typename TTraits> 63 template <typename TValue, typename TTraits> 68 template <typename TValue, typename TTraits> 73 template <typename TValue, typename TTraits> 78 template <typename TValue, typename TTraits> 245 _streamRead(TValue * target, 267 inline TValue 287 inline TValue [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/bs_tools/ |
H A D | bisar_score_data.h | 53 BsSubstitutionMatrix(TValue &fMeth, TValue &fBsConversion, TValue &seqIdentity, TValue &fN) in BsSubstitutionMatrix() 98 BsSubstitutionMatrix(TValue &fMeth, TValue &fBsConversion, TValue &seqIdentity, TValue &fN) in BsSubstitutionMatrix() 336 TValue fA; 337 TValue fC; 338 TValue fG; 339 TValue fT; 340 TValue fN; 392 TValue fA; 393 TValue fC; 394 TValue fG; [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/basic/ |
H A D | basic_holder.h | 85 typedef TValue Type; 90 typedef TValue * Type; 95 typedef TValue Type; 541 template <typename TValue> inline size_t length(TValue const * me); 542 template <typename TValue> inline size_t length(TValue * me); 849 TValue & value_) 862 TValue & value_) 875 TValue * & value_) 897 TValue * & value_) 1378 operator TValue &() [all …]
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H A D | basic_alphabet_trait_basic.h | 61 template<typename TValue> 64 TValue * end_) in arrayConstruct() 95 TValue * end_, in arrayConstruct() 151 template<typename TValue> 161 template<typename TValue> 171 template<typename TValue> 185 template<typename TValue> 194 template<typename TValue> 197 TValue * end_, in _arrayDestructPointer() 203 template<typename TValue> [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/stream/ |
H A D | adapt_ios.h | 60 template <typename TValue, typename TTraits> 66 template <typename TValue, typename TTraits> 72 template <typename TValue, typename TTraits> 78 template <typename TValue, typename TTraits> 84 template <typename TValue, typename TTraits> 88 template <typename TValue, typename TTraits> 93 template <typename TValue, typename TTraits> 97 template <typename TValue, typename TTraits> 102 template <typename TValue, typename TTraits> 106 template <typename TValue, typename TTraits> [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/stream/ |
H A D | adapt_ios.h | 60 template <typename TValue, typename TTraits> 66 template <typename TValue, typename TTraits> 72 template <typename TValue, typename TTraits> 78 template <typename TValue, typename TTraits> 84 template <typename TValue, typename TTraits> 88 template <typename TValue, typename TTraits> 93 template <typename TValue, typename TTraits> 97 template <typename TValue, typename TTraits> 102 template <typename TValue, typename TTraits> 106 template <typename TValue, typename TTraits> [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/stream/ |
H A D | adapt_ios.h | 60 template <typename TValue, typename TTraits> 66 template <typename TValue, typename TTraits> 72 template <typename TValue, typename TTraits> 78 template <typename TValue, typename TTraits> 84 template <typename TValue, typename TTraits> 88 template <typename TValue, typename TTraits> 93 template <typename TValue, typename TTraits> 97 template <typename TValue, typename TTraits> 102 template <typename TValue, typename TTraits> 106 template <typename TValue, typename TTraits> [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
H A D | dp_matrix.h | 85 typedef unsigned int TValue; typedef 87 static const TValue VERTICAL = 0u; 89 static const TValue DIMENSION = 2u; 104 template <typename TValue> 105 class DPMatrix_<TValue, FullDPMatrix> 109 typedef Matrix<TValue, 2> THost; 227 typedef TValue Type; 233 typedef TValue const Type; 243 typedef TValue & Type; 249 typedef TValue const & Type; [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/score/ |
H A D | score_generated_forwards.h | 245 template <typename TValue, typename TSpec> inline TValue scoreGap(Score<TValue, TSpec> const & me);… 251 template <typename TValue> inline TValue scoreGapExtend(Score<TValue, EditDistance> &); // "… 252 template <typename TValue> inline TValue scoreGapExtend(Score<TValue, EditDistance> const &); … 272 template <typename TValue, typename TSpec> inline TValue scoreGapOpen(Score<TValue, TSpec> const & … 273 template <typename TValue> inline TValue scoreGapOpen(Score<TValue, EditDistance> &); // "se… 274 template <typename TValue> inline TValue scoreGapOpen(Score<TValue, EditDistance> const &); … 294 template <typename TValue, typename TSpec> inline TValue scoreMatch(Score<TValue, TSpec> const & me… 295 template <typename TValue> inline TValue scoreMatch(Score<TValue, EditDistance> &); // "seqa… 296 template <typename TValue> inline TValue scoreMatch(Score<TValue, EditDistance> const &); //… 302 template <typename TValue> inline TValue scoreMismatch(Score<TValue, EditDistance> &); // "s… [all …]
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H A D | score_simple.h | 82 Score(TValue _match, TValue _mismatch, TValue _gap) in Score() 110 Score(TValue _match, TValue _mismatch, TValue _gap_extend, TValue _gap_open) in Score() 144 inline TValue 165 setScoreMatch(Score<TValue, TSpec> & me, TValue const & value) { in setScoreMatch() argument 185 inline TValue 228 inline TValue 271 inline TValue 293 setScoreGapOpen(Score<TValue, TSpec> & me, TValue const & value) { in setScoreGapOpen() argument 317 inline TValue 339 setScoreGap(Score<TValue, TSpec> & me, TValue const & value) { in setScoreGap() argument [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/basic/ |
H A D | holder_tristate.h | 58 template <typename TValue> inline size_t length(TValue const * me); 59 template <typename TValue> inline size_t length(TValue * me); 94 template <typename TValue> 172 template <typename TValue> 247 template <typename TValue> 318 template <typename TValue> 399 template <typename TValue> 405 template <typename TValue> 724 TValue & value_) 734 TValue & value_) [all …]
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H A D | tuple_bit_compressed.h | 46 template <typename TValue> 49 template <typename TValue> 91 template <typename TValue, unsigned SIZE> 92 struct Tuple<TValue, SIZE, BitPacked<> > 121 inline const TValue 211 inline TValue 222 TValue 284 move(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > & t2) 291 set(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) 298 assign(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/basic/ |
H A D | holder_tristate.h | 58 template <typename TValue> inline size_t length(TValue const * me); 59 template <typename TValue> inline size_t length(TValue * me); 94 template <typename TValue> 172 template <typename TValue> 247 template <typename TValue> 318 template <typename TValue> 399 template <typename TValue> 405 template <typename TValue> 724 TValue & value_) 734 TValue & value_) [all …]
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H A D | tuple_bit_compressed.h | 46 template <typename TValue> 49 template <typename TValue> 91 template <typename TValue, unsigned SIZE> 92 struct Tuple<TValue, SIZE, BitPacked<> > 121 inline const TValue 211 inline TValue 222 TValue 284 move(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > & t2) 291 set(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) 298 assign(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/basic/ |
H A D | holder_tristate.h | 54 template <typename TValue> inline size_t length(TValue const * me); 55 template <typename TValue> inline size_t length(TValue * me); 90 template <typename TValue> 176 template <typename TValue> 254 template <typename TValue> 332 template <typename TValue> 420 template <typename TValue> 426 template <typename TValue> 762 TValue & value_) 773 TValue & value_) [all …]
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H A D | tuple_bit_compressed.h | 46 template <typename TValue> 49 template <typename TValue> 93 template <typename TValue, unsigned SIZE> 94 struct Tuple<TValue, SIZE, BitPacked<> > 123 SEQAN_HOST_DEVICE inline const TValue 219 inline TValue 230 TValue 292 move(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > & t2) 299 set(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) 306 assign(Tuple<TValue, SIZE, BitPacked<> > & t1, Tuple<TValue, SIZE, BitPacked<> > const & t2) [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence/ |
H A D | adapt_std_list.h | 163 template<typename TValue> 173 template <typename TValue> 183 template<typename TValue> 186 end(std::list<TValue> & list, 193 template <typename TValue> 203 template <typename TValue> 211 template <typename TValue> 219 template <typename TValue> 227 template <typename TValue> 235 template <typename TValue> [all …]
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/dports/science/InsightToolkit/ITK-5.0.1/Modules/Core/Common/include/ |
H A D | itkArray.hxx | 28 Array< TValue > 36 Array<TValue> 47 Array< TValue > 58 Array< TValue > 69 Array< TValue > 81 Array< TValue > 96 Array< TValue > 107 Array< TValue > 121 Array< TValue > 158 Array< TValue > [all …]
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/dports/lang/mono/mono-5.10.1.57/external/corefx/src/System.Collections.Immutable/src/System/Collections/Immutable/ |
H A D | ImmutableDictionary.cs | 25 public static ImmutableDictionary<TKey, TValue> Create<TKey, TValue>() in Create() 56 …atic ImmutableDictionary<TKey, TValue> Create<TKey, TValue>(IEqualityComparer<TKey> keyComparer, I… in Create() 70 …public static ImmutableDictionary<TKey, TValue> CreateRange<TKey, TValue>(IEnumerable<KeyValuePair… in CreateRange() 85 …tableDictionary<TKey, TValue> CreateRange<TKey, TValue>(IEqualityComparer<TKey> keyComparer, IEnum… in CreateRange() 101 …, TValue> CreateRange<TKey, TValue>(IEqualityComparer<TKey> keyComparer, IEqualityComparer<TValue>… in CreateRange() 113 public static ImmutableDictionary<TKey, TValue>.Builder CreateBuilder<TKey, TValue>() in CreateBuilder() 280 …static ImmutableDictionary<TKey, TValue> ToImmutableDictionary<TKey, TValue>(this IEnumerable<KeyV… in ToImmutableDictionary() 297 …public static bool Contains<TKey, TValue>(this IImmutableDictionary<TKey, TValue> map, TKey key, T… in Contains() 311 …public static TValue GetValueOrDefault<TKey, TValue>(this IImmutableDictionary<TKey, TValue> dicti… in GetValueOrDefault() 328 …public static TValue GetValueOrDefault<TKey, TValue>(this IImmutableDictionary<TKey, TValue> dicti… in GetValueOrDefault() [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
H A D | shape_base.h | 115 typedef TValue Type; 148 TValue leftChar; 327 me.hValue = me.hValue * ValueSize<TValue>::VALUE + ordValue((TValue)*it); 347 hash * ValueSize<TValue>::VALUE + ordValue((TValue)*it), 380 me.hValue = me.hValue * ValueSize<TValue>::VALUE + ordValue((TValue)*it); 399 TValue const, 410 TValue const, 419 typename TValue, 439 typename TValue, 483 me.hValue = me.hValue * ValueSize<TValue>::VALUE + ordValue((TValue)*it); [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/score/ |
H A D | score_simple.h | 74 Score(TValue _match, TValue _mismatch, TValue _gap) in Score() 94 Score(TValue _match, TValue _mismatch, TValue _gap_extend, TValue _gap_open) in Score() 122 inline TValue 139 setScoreMatch(Score<TValue, TSpec> & me, TValue const & value) { in setScoreMatch() argument 155 inline TValue 172 setScoreMismatch(Score<TValue, TSpec> & me, TValue const & value) { in setScoreMismatch() argument 188 inline TValue 221 inline TValue 239 setScoreGapOpen(Score<TValue, TSpec> & me, TValue const & value) { in setScoreGapOpen() argument 257 inline TValue [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/score/ |
H A D | score_simple.h | 74 Score(TValue _match, TValue _mismatch, TValue _gap) in Score() 94 Score(TValue _match, TValue _mismatch, TValue _gap_extend, TValue _gap_open) in Score() 122 inline TValue 139 setScoreMatch(Score<TValue, TSpec> & me, TValue const & value) { in setScoreMatch() argument 155 inline TValue 172 setScoreMismatch(Score<TValue, TSpec> & me, TValue const & value) { in setScoreMismatch() argument 188 inline TValue 221 inline TValue 239 setScoreGapOpen(Score<TValue, TSpec> & me, TValue const & value) { in setScoreGapOpen() argument 257 inline TValue [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence/ |
H A D | adapt_array_pointer.h | 192 begin(TValue * me, 210 begin(TValue * me, 228 end(TValue * me, 245 end(TValue * me, 260 inline TValue & 261 value(TValue * me, 316 TValue zero = TValue(0); 327 TValue const zero = TValue(); 354 clear(TValue * me) 614 TValue * me, [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence/ |
H A D | adapt_array_pointer.h | 192 begin(TValue * me, 210 begin(TValue * me, 228 end(TValue * me, 245 end(TValue * me, 260 inline TValue & 261 value(TValue * me, 316 TValue zero = TValue(0); 327 TValue const zero = TValue(); 354 clear(TValue * me) 614 TValue * me, [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/sequence/ |
H A D | adapt_std_list.h | 167 template<typename TValue> 177 template <typename TValue> 188 template<typename TValue> 191 end(std::list<TValue> & list, 198 template <typename TValue> 211 template <typename TValue> 219 template <typename TValue> 228 template <typename TValue> 236 template <typename TValue> 245 template <typename TValue> [all …]
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