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Searched refs:TVertexSet (Results 1 – 12 of 12) sorted by relevance

/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_algorithms/
H A Dweighted_bipartite_matching.h120 typedef std::set<TVertexDescriptor> TVertexSet; in _weightedBipartiteMatching() typedef
121 TVertexSet setS; in _weightedBipartiteMatching()
122 TVertexSet setNeighborS; in _weightedBipartiteMatching()
123 TVertexSet setT; in _weightedBipartiteMatching()
160 typedef typename TVertexSet::iterator TVertexSetIter; in _weightedBipartiteMatching()
162 TVertexSet diffSet; in _weightedBipartiteMatching()
246 typedef String<TVertexDescriptor> TVertexSet; in weightedBipartiteMatching() typedef
247 typedef typename Iterator<TVertexSet>::Type TVertexSetIter; in weightedBipartiteMatching()
248 TVertexSet set1; in weightedBipartiteMatching()
249 TVertexSet set2; in weightedBipartiteMatching()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/
H A Dweighted_bipartite_matching.h120 typedef std::set<TVertexDescriptor> TVertexSet; in _weightedBipartiteMatching() typedef
121 TVertexSet setS; in _weightedBipartiteMatching()
122 TVertexSet setNeighborS; in _weightedBipartiteMatching()
123 TVertexSet setT; in _weightedBipartiteMatching()
160 typedef typename TVertexSet::iterator TVertexSetIter; in _weightedBipartiteMatching()
162 TVertexSet diffSet; in _weightedBipartiteMatching()
246 typedef String<TVertexDescriptor> TVertexSet; in weightedBipartiteMatching() typedef
247 typedef typename Iterator<TVertexSet>::Type TVertexSetIter; in weightedBipartiteMatching()
248 TVertexSet set1; in weightedBipartiteMatching()
249 TVertexSet set2; in weightedBipartiteMatching()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_algorithms/
H A Dweighted_bipartite_matching.h120 typedef std::set<TVertexDescriptor> TVertexSet; in _weightedBipartiteMatching() typedef
121 TVertexSet setS; in _weightedBipartiteMatching()
122 TVertexSet setNeighborS; in _weightedBipartiteMatching()
123 TVertexSet setT; in _weightedBipartiteMatching()
160 typedef typename TVertexSet::iterator TVertexSetIter; in _weightedBipartiteMatching()
162 TVertexSet diffSet; in _weightedBipartiteMatching()
246 typedef String<TVertexDescriptor> TVertexSet; in weightedBipartiteMatching() typedef
247 typedef typename Iterator<TVertexSet>::Type TVertexSetIter; in weightedBipartiteMatching()
248 TVertexSet set1; in weightedBipartiteMatching()
249 TVertexSet set2; in weightedBipartiteMatching()
/dports/biology/seqan1/seqan-1.3.1/seqan/graph_msa/
H A Dgraph_align_tcoffee_progressive.h251 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
267 typedef typename Iterator<TVertexSet const>::Type TVertexSetIterConst; in heaviestMatching()
357 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
360 typedef typename Iterator<TVertexSet const, Rooted>::Type TVertexSetIter; in heaviestMatching()
361 typedef typename Iterator<TVertexSet, Rooted>::Type TIter; in heaviestMatching()
374 TVertexSet tmp; in heaviestMatching()
395 TVertexSet tmp; in heaviestMatching()
406 TVertexSet tmp; in heaviestMatching()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_msa/
H A Dgraph_align_tcoffee_progressive.h247 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
263 typedef typename Iterator<TVertexSet const>::Type TVertexSetIterConst; in heaviestMatching()
353 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
356 typedef typename Iterator<TVertexSet const, Rooted>::Type TVertexSetIter; in heaviestMatching()
370 TVertexSet tmp; in heaviestMatching()
391 TVertexSet tmp; in heaviestMatching()
402 TVertexSet tmp; in heaviestMatching()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_msa/
H A Dgraph_align_tcoffee_progressive.h247 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
263 typedef typename Iterator<TVertexSet const>::Type TVertexSetIterConst; in heaviestMatching()
353 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
356 typedef typename Iterator<TVertexSet const, Rooted>::Type TVertexSetIter; in heaviestMatching()
370 TVertexSet tmp; in heaviestMatching()
391 TVertexSet tmp; in heaviestMatching()
402 TVertexSet tmp; in heaviestMatching()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_msa/
H A Dgraph_align_tcoffee_progressive.h250 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
266 typedef typename Iterator<TVertexSet const>::Type TVertexSetIterConst; in heaviestMatching()
356 typedef typename Value<TString>::Type TVertexSet; in heaviestMatching() typedef
359 typedef typename Iterator<TVertexSet const, Rooted>::Type TVertexSetIter; in heaviestMatching()
373 TVertexSet tmp; in heaviestMatching()
394 TVertexSet tmp; in heaviestMatching()
405 TVertexSet tmp; in heaviestMatching()
/dports/biology/seqan1/seqan-1.3.1/seqan/graph_algorithms/
H A Dgraph_algorithm.h1787 typedef std::set<TVertexDescriptor> TVertexSet; in _weightedBipartiteMatching() typedef
1788 TVertexSet setS; in _weightedBipartiteMatching()
1789 TVertexSet setNeighborS; in _weightedBipartiteMatching()
1790 TVertexSet setT; in _weightedBipartiteMatching()
1827 typedef typename TVertexSet::iterator TVertexSetIter; in _weightedBipartiteMatching()
1829 TVertexSet diffSet; in _weightedBipartiteMatching()
1913 typedef String<TVertexDescriptor> TVertexSet; in weightedBipartiteMatching() typedef
1914 typedef typename Iterator<TVertexSet>::Type TVertexSetIter; in weightedBipartiteMatching()
1915 TVertexSet set1; in weightedBipartiteMatching()
1916 TVertexSet set2; in weightedBipartiteMatching()
/dports/biology/seqan1/seqan-1.3.1/seqan/refinement/
H A Dgraph_impl_align.h1833 typedef typename Value<TString>::Type TVertexSet;
1836 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIter;
1837 typedef typename Iterator<TVertexSet, Standard>::Type TIter;
1843 resize(align, alignLength, TVertexSet(), Exact() );
1954 typedef typename Value<TString>::Type TVertexSet;
1968 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIterConst;
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/
H A Dgraph_impl_align.h1818 typedef typename Value<TString>::Type TVertexSet;
1821 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIter;
1827 resize(align, alignLength, TVertexSet(), Exact() );
1938 typedef typename Value<TString>::Type TVertexSet;
1952 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIterConst;
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/
H A Dgraph_impl_align.h1818 typedef typename Value<TString>::Type TVertexSet;
1821 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIter;
1827 resize(align, alignLength, TVertexSet(), Exact() );
1938 typedef typename Value<TString>::Type TVertexSet;
1952 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIterConst;
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/
H A Dgraph_impl_align.h1852 typedef typename Value<TString>::Type TVertexSet;
1855 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIter;
1861 resize(align, alignLength, TVertexSet(), Exact() );
1973 typedef typename Value<TString>::Type TVertexSet;
1987 typedef typename Iterator<TVertexSet const, Standard>::Type TVertexSetIterConst;