/dports/comms/cqrlog/cqrlog-2.5.0/src/ |
H A D | fDXCluster.pas | 1424 function SpacesFromLeft(What : String; TargetLen : Integer) : String; in SpacesFromLeft() 1430 n := TargetLen - Length(what); 1434 for i:=Length(What) to TargetLen do 1442 function SpacesFromRight(What : String; TargetLen : Integer) : String; in SpacesFromRight() 1448 n := TargetLen - Length(what); 1452 for i:=Length(What) to TargetLen do
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/dports/devel/asl/asl-current/ |
H A D | das.c | 105 static void PrTabs(FILE *pDestFile, int TargetLen, int ThisLen) in PrTabs() argument 107 while (ThisLen < TargetLen) in PrTabs()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 664 int TargetLen() const { return m_target_len; } in TargetLen() function in CAlignMap 755 int TargetLen() const { return m_alignmap.TargetLen(); } in TargetLen() function in CAlignModel
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | asn1.cpp | 767 int product_length = model.TargetLen()/3; in AlignModelToSeqalign() 773 spliced_seg.SetProduct_length(model.TargetLen()); in AlignModelToSeqalign() 776 …(model.Status() & CAlignModel::eReversed)? model.PolyALen() - 1 : model.TargetLen() - model.PolyAL… in AlignModelToSeqalign() 880 int right_not_aligned = model.TargetLen()-tlim.GetTo()-1; in AlignModelToSeqalign()
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H A D | aligncollapser.cpp | 370 int not_aligned_right = align.TargetLen()-1-tlim.GetTo(); in ClipNotSupportedFlanks() 638 …transcript_exons, editedmodel.FrameShifts(), align.Orientation(), align.GetAlignMap().TargetLen()); in RemoveNotSupportedIntronsFromTranscript() 669 int tlen = align.TargetLen(); in CleanSelfTranscript() 2152 …if(tlim.GetTo() < align.TargetLen()-30 && ((align.Status()&CGeneModel::ePolyA) == 0 || (align.Stat… in FillGapsInAlignmentAndAddToGenomicGaps() 2154 right_texon = TSignedSeqRange(tlim.GetTo()+1,align.TargetLen()-1); in FillGapsInAlignmentAndAddToGenomicGaps() 2227 …ns(), transcript_exons, align.FrameShifts(), align.Orientation(), align.GetAlignMap().TargetLen()); in FillGapsInAlignmentAndAddToGenomicGaps() 2298 int not_aligned_3p = a.TargetLen()-1-tlim.GetTo(); in AddAlignment()
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H A D | chainer.cpp | 4243 if(align->AlignLen() > 0.5*orig_align->TargetLen()) in HasTrustedEvidence() 4647 if(orig_align->TargetLen()*0.8 < RealCdsLen()) { in SetOpenForPartialyAlignedProteins() 5838 if(orig_align->TargetLen() == 0) // protein of not known length in SetConfirmedStartStopForCompleteProteins() 5860 … if(extra_length > not_aligned-minscor.m_endprotfrac*orig_align->TargetLen()) { in SetConfirmedStartStopForCompleteProteins() 5875 … if(extra_length > not_aligned-minscor.m_endprotfrac*orig_align->TargetLen()) { in SetConfirmedStartStopForCompleteProteins() 5944 …tinuous() && i->second > 0.8*orig_align->TargetLen()) || i->second > minscor.m_minprotfrac*orig_al… in CollectTrustedmRNAsProts() 5961 … if(i->second+gap_cds > 0.8*orig_align->TargetLen()) { //realign proteins if close enough in CollectTrustedmRNAsProts() 6090 … && it->AlignLen() > minscor.m_minprotfrac*orig_aligns[it->ID()]->TargetLen()) { in FilterOutChimeras() 6349 int threepclip = maxclip-(orig->TargetLen()-tlim.GetTo()-1); in FindSelenoproteinsClipProteinsToStartStop() 6970 if(cds.HasStop() && iter->second.second && alignedlim.GetTo() == algn.TargetLen()-1) in SetConfirmedStartStopForProteinAlignments() [all …]
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H A D | gnomon_seq.cpp | 626 …int l = (m_orientation == ePlus) ? m_edited_ranges.front().GetFrom() : CAlignMap::TargetLen()-m_ed… in EditedSequence() 656 …int l = (m_orientation == ePlus) ? CAlignMap::TargetLen()-m_edited_ranges.back().GetTo()-1 : m_edi… in EditedSequence()
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H A D | gnomon_model.cpp | 248 …gnmap = CAlignMap(Exons(), transcript_exons, FrameShifts(), Orientation(), m_alignmap.TargetLen()); in RecalculateAlignMap() 712 …_ASSERT(cds_info.ReadingFrame().GetTo() >= mrnamap.TargetLen()-3 || (cds_info.HasStop() && cds_inf… in CdsInvariant() 1416 return TargetLen()-lim.GetTo()-1; in PolyALen() 1713 if(a.TargetLen() > 0) in CollectAttributes() 1714 attributes["TargetLen"] = NStr::NumericToString(a.TargetLen()); in CollectAttributes()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
H A D | alignment_scorer.cpp | 267 TSeqPos TargetLen = Handle.GetInst_Length(); in ScoreAlignments() local 312 if(TargetRange.GetTo() >= (TargetLen-1)) in ScoreAlignments()
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/dports/www/writefreely/writefreely-0.13.1/vendor/github.com/writeas/activity/pub/ |
H A D | internal.go | 1365 TargetLen() (l int) methodSpec 1373 for i := 0; i < a.TargetLen(); i++ { 2002 for i := 0; i < a.TargetLen(); i++ {
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/dports/www/writefreely/writefreely-0.13.1/vendor/github.com/writeas/activity/streams/ |
H A D | gen_create.go | 138 return t.raw.TargetLen()
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H A D | gen_reject.go | 138 return t.raw.TargetLen()
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H A D | gen_remove.go | 138 return t.raw.TargetLen()
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H A D | gen_block.go | 138 return t.raw.TargetLen()
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H A D | gen_delete.go | 138 return t.raw.TargetLen()
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H A D | gen_flag.go | 138 return t.raw.TargetLen()
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H A D | gen_join.go | 138 return t.raw.TargetLen()
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H A D | gen_leave.go | 138 return t.raw.TargetLen()
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H A D | gen_offer.go | 138 return t.raw.TargetLen()
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H A D | gen_tentativeaccept.go | 138 return t.raw.TargetLen()
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H A D | gen_tentativereject.go | 138 return t.raw.TargetLen()
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H A D | gen_travel.go | 86 return t.raw.TargetLen()
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H A D | gen_undo.go | 138 return t.raw.TargetLen()
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H A D | gen_update.go | 138 return t.raw.TargetLen()
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H A D | gen_view.go | 138 return t.raw.TargetLen()
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