Home
last modified time | relevance | path

Searched refs:TargetLen (Results 1 – 25 of 74) sorted by relevance

123

/dports/comms/cqrlog/cqrlog-2.5.0/src/
H A DfDXCluster.pas1424 function SpacesFromLeft(What : String; TargetLen : Integer) : String; in SpacesFromLeft()
1430 n := TargetLen - Length(what);
1434 for i:=Length(What) to TargetLen do
1442 function SpacesFromRight(What : String; TargetLen : Integer) : String; in SpacesFromRight()
1448 n := TargetLen - Length(what);
1452 for i:=Length(What) to TargetLen do
/dports/devel/asl/asl-current/
H A Ddas.c105 static void PrTabs(FILE *pDestFile, int TargetLen, int ThisLen) in PrTabs() argument
107 while (ThisLen < TargetLen) in PrTabs()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp664 int TargetLen() const { return m_target_len; } in TargetLen() function in CAlignMap
755 int TargetLen() const { return m_alignmap.TargetLen(); } in TargetLen() function in CAlignModel
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dasn1.cpp767 int product_length = model.TargetLen()/3; in AlignModelToSeqalign()
773 spliced_seg.SetProduct_length(model.TargetLen()); in AlignModelToSeqalign()
776 …(model.Status() & CAlignModel::eReversed)? model.PolyALen() - 1 : model.TargetLen() - model.PolyAL… in AlignModelToSeqalign()
880 int right_not_aligned = model.TargetLen()-tlim.GetTo()-1; in AlignModelToSeqalign()
H A Daligncollapser.cpp370 int not_aligned_right = align.TargetLen()-1-tlim.GetTo(); in ClipNotSupportedFlanks()
638 …transcript_exons, editedmodel.FrameShifts(), align.Orientation(), align.GetAlignMap().TargetLen()); in RemoveNotSupportedIntronsFromTranscript()
669 int tlen = align.TargetLen(); in CleanSelfTranscript()
2152 …if(tlim.GetTo() < align.TargetLen()-30 && ((align.Status()&CGeneModel::ePolyA) == 0 || (align.Stat… in FillGapsInAlignmentAndAddToGenomicGaps()
2154 right_texon = TSignedSeqRange(tlim.GetTo()+1,align.TargetLen()-1); in FillGapsInAlignmentAndAddToGenomicGaps()
2227 …ns(), transcript_exons, align.FrameShifts(), align.Orientation(), align.GetAlignMap().TargetLen()); in FillGapsInAlignmentAndAddToGenomicGaps()
2298 int not_aligned_3p = a.TargetLen()-1-tlim.GetTo(); in AddAlignment()
H A Dchainer.cpp4243 if(align->AlignLen() > 0.5*orig_align->TargetLen()) in HasTrustedEvidence()
4647 if(orig_align->TargetLen()*0.8 < RealCdsLen()) { in SetOpenForPartialyAlignedProteins()
5838 if(orig_align->TargetLen() == 0) // protein of not known length in SetConfirmedStartStopForCompleteProteins()
5860 … if(extra_length > not_aligned-minscor.m_endprotfrac*orig_align->TargetLen()) { in SetConfirmedStartStopForCompleteProteins()
5875 … if(extra_length > not_aligned-minscor.m_endprotfrac*orig_align->TargetLen()) { in SetConfirmedStartStopForCompleteProteins()
5944 …tinuous() && i->second > 0.8*orig_align->TargetLen()) || i->second > minscor.m_minprotfrac*orig_al… in CollectTrustedmRNAsProts()
5961 … if(i->second+gap_cds > 0.8*orig_align->TargetLen()) { //realign proteins if close enough in CollectTrustedmRNAsProts()
6090 … && it->AlignLen() > minscor.m_minprotfrac*orig_aligns[it->ID()]->TargetLen()) { in FilterOutChimeras()
6349 int threepclip = maxclip-(orig->TargetLen()-tlim.GetTo()-1); in FindSelenoproteinsClipProteinsToStartStop()
6970 if(cds.HasStop() && iter->second.second && alignedlim.GetTo() == algn.TargetLen()-1) in SetConfirmedStartStopForProteinAlignments()
[all …]
H A Dgnomon_seq.cpp626 …int l = (m_orientation == ePlus) ? m_edited_ranges.front().GetFrom() : CAlignMap::TargetLen()-m_ed… in EditedSequence()
656 …int l = (m_orientation == ePlus) ? CAlignMap::TargetLen()-m_edited_ranges.back().GetTo()-1 : m_edi… in EditedSequence()
H A Dgnomon_model.cpp248 …gnmap = CAlignMap(Exons(), transcript_exons, FrameShifts(), Orientation(), m_alignmap.TargetLen()); in RecalculateAlignMap()
712 …_ASSERT(cds_info.ReadingFrame().GetTo() >= mrnamap.TargetLen()-3 || (cds_info.HasStop() && cds_inf… in CdsInvariant()
1416 return TargetLen()-lim.GetTo()-1; in PolyALen()
1713 if(a.TargetLen() > 0) in CollectAttributes()
1714 attributes["TargetLen"] = NStr::NumericToString(a.TargetLen()); in CollectAttributes()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/
H A Dalignment_scorer.cpp267 TSeqPos TargetLen = Handle.GetInst_Length(); in ScoreAlignments() local
312 if(TargetRange.GetTo() >= (TargetLen-1)) in ScoreAlignments()
/dports/www/writefreely/writefreely-0.13.1/vendor/github.com/writeas/activity/pub/
H A Dinternal.go1365 TargetLen() (l int) methodSpec
1373 for i := 0; i < a.TargetLen(); i++ {
2002 for i := 0; i < a.TargetLen(); i++ {
/dports/www/writefreely/writefreely-0.13.1/vendor/github.com/writeas/activity/streams/
H A Dgen_create.go138 return t.raw.TargetLen()
H A Dgen_reject.go138 return t.raw.TargetLen()
H A Dgen_remove.go138 return t.raw.TargetLen()
H A Dgen_block.go138 return t.raw.TargetLen()
H A Dgen_delete.go138 return t.raw.TargetLen()
H A Dgen_flag.go138 return t.raw.TargetLen()
H A Dgen_join.go138 return t.raw.TargetLen()
H A Dgen_leave.go138 return t.raw.TargetLen()
H A Dgen_offer.go138 return t.raw.TargetLen()
H A Dgen_tentativeaccept.go138 return t.raw.TargetLen()
H A Dgen_tentativereject.go138 return t.raw.TargetLen()
H A Dgen_travel.go86 return t.raw.TargetLen()
H A Dgen_undo.go138 return t.raw.TargetLen()
H A Dgen_update.go138 return t.raw.TargetLen()
H A Dgen_view.go138 return t.raw.TargetLen()

123