| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
| H A D | AddDocumentTask.cpp | 33 : Task("Add document task", TaskFlags_NR_FOSE_COSC), document(_d), dpt(nullptr), conf(_conf) { in AddDocumentTask()
45 : Task("Add document task", TaskFlags_NR_FOSE_COSC), document(nullptr), dpt(_dpt), conf(c) { in AddDocumentTask()
|
| H A D | ReverseSequenceTask.cpp | 39 : Task(tr("Reverse Complement Sequence Task"), TaskFlags_NR_FOSE_COSC), in ReverseComplementSequenceTask()
50 : Task(tr("Reverse Sequence Task"), TaskFlags_NR_FOSE_COSC), in ReverseSequenceTask()
146 : Task(tr("Complement Sequence Task"), TaskFlags_NR_FOSE_COSC), in ComplementSequenceTask()
|
| H A D | SequenceDbiWalkerTask.h | 60 …, SequenceDbiWalkerCallback *callback, const QString &name, TaskFlags tf = TaskFlags_NR_FOSE_COSC);
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bowtie2/ |
| H A D | Bowtie2Task.cpp | 38 : ExternalToolSupportTask("Build Bowtie2 index", TaskFlags_NR_FOSE_COSC), in Bowtie2BuildIndexTask()
64 : ExternalToolSupportTask("Bowtie2 reads assembly", TaskFlags_NR_FOSE_COSC), in Bowtie2AlignTask()
241 : DnaAssemblyToReferenceTask(settings, TaskFlags_NR_FOSE_COSC, justBuildIndex), in Bowtie2Task()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_sequence/find_pattern/ |
| H A D | FindPatternTask.cpp | 35 : Task(tr("Searching a pattern in sequence task"), TaskFlags_NR_FOSE_COSC), in FindPatternTask()
123 …: Task(tr("Searching patterns in sequence task"), TaskFlags_NR_FOSE_COSC), settings(settings), rem… in FindPatternListTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/phylip/src/ |
| H A D | PhylipTask.cpp | 34 …: CmdlineTask(tr("PHYLIP task"), TaskFlags_NR_FOSE_COSC), msaRef(msaRef), outDbiRef(outDbiRef), se… in PhylipTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/dna_export/src/tasks/ |
| H A D | ExportMca2MsaTask.cpp | 39 : DocumentProviderTask(tr("Export Sanger reads task"), TaskFlags_NR_FOSE_COSC), in ExportMca2MsaTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/phyml/ |
| H A D | PhyMLTask.cpp | 41 : Task(tr("Generating input file for PhyML"), TaskFlags_NR_FOSE_COSC), in PhyMLPrepareDataForCalculation()
193 TaskFlags_NR_FOSE_COSC), in PhyMLGetCalculatedTreeTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/pcr/src/ |
| H A D | InSilicoPcrWorkflowTask.cpp | 27 …: Task(tr("In silico PCR workflow task"), TaskFlags_NR_FOSE_COSC), productSettings(productSettings… in InSilicoPcrWorkflowTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cufflinks/ |
| H A D | GffreadSupportTask.cpp | 34 …: ExternalToolSupportTask(tr("Running Gffread task"), TaskFlags_NR_FOSE_COSC), settings(_settings)… in GffreadSupportTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/kraken_support/src/ |
| H A D | KrakenBuildTask.cpp | 56 : ExternalToolSupportTask(tr("%1 Kraken database"), TaskFlags_NR_FOSE_COSC), in KrakenBuildTask()
106 …ialTask = new SequentialMultiTask(tr("Sequential execution"), newSubTasks, TaskFlags_NR_FOSE_COSC); in prepare()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/bedtools/ |
| H A D | BedtoolsIntersectTask.cpp | 67 : ExternalToolSupportTask(tr("BedtoolsIntersect task"), TaskFlags_NR_FOSE_COSC), in BedtoolsIntersectTask()
118 : ExternalToolSupportTask(tr("Intersect annotations task"), TaskFlags_NR_FOSE_COSC), in BedtoolsIntersectAnnotationsByEntityTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/diamond_support/src/ |
| H A D | DiamondBuildTask.cpp | 34 : ExternalToolSupportTask(tr("Build DIAMOND database"), TaskFlags_NR_FOSE_COSC), in DiamondBuildTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/samtools/ |
| H A D | TabixSupportTask.cpp | 38 : ExternalToolSupportTask(tr("Generate index with Tabix task"), TaskFlags_NR_FOSE_COSC), in TabixSupportTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cap3/ |
| H A D | CAP3SupportTask.cpp | 50 : ExternalToolSupportTask("CAP3SupportTask", TaskFlags_NR_FOSE_COSC), in CAP3SupportTask()
128 : Task(tr("CAP3 run and open result task"), TaskFlags_NR_FOSE_COSC), in RunCap3AndOpenResultTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/hmmer/ |
| H A D | HmmerBuildFromFileTask.cpp | 34 …: ExternalToolSupportTask(tr("Build HMMER profile from file"), TaskFlags_NR_FOSE_COSC | TaskFlag_R… in HmmerBuildFromFileTask()
|
| H A D | ConvertAlignment2StockholmTask.cpp | 41 : Task(tr("Convert alignment to Stockholm format"), TaskFlags_NR_FOSE_COSC), in ConvertAlignment2Stockholm()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_assembly/ |
| H A D | ExtractAssemblyRegionTask.cpp | 45 …: Task(tr("Extract Assembly Region And Open View Task"), TaskFlags_NR_FOSE_COSC), settings(setting… in ExtractAssemblyRegionAndOpenViewTask()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/clipboard/ |
| H A D | SubalignmentToClipboardTask.h | 42 …QList<qint64> &rowIds, const U2Region &collumnRange, TaskFlags taskFlags = TaskFlags_NR_FOSE_COSC);
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/misc/ |
| H A D | GenomeAssemblyMultiTask.cpp | 41 …: Task("GenomeAssemblyMultiTask", TaskFlags_NR_FOSE_COSC | TaskFlag_ReportingIsSupported | TaskFla… in GenomeAssemblyMultiTask()
|
| H A D | DnaAssemblyMultiTask.cpp | 40 …: ExternalToolSupportTask("DnaAssemblyMultiTask", TaskFlags_NR_FOSE_COSC | TaskFlag_ReportingIsSup… in DnaAssemblyMultiTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/align_worker_subtasks/ |
| H A D | FormatDBSubTask.cpp | 47 : Task(tr("Format DB task wrapper"), TaskFlags_NR_FOSE_COSC), in FormatDBSubTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/ |
| H A D | PrepareInputFastaFilesTask.cpp | 36 : Task(tr("Prepare input FASTA files"), TaskFlags_NR_FOSE_COSC), in PrepareInputFastaFilesTask()
|
| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/stringtie/ |
| H A D | StringTieTask.cpp | 51 … : ExternalToolSupportTask(tr("Assemble Transcripts with StringTie task"), TaskFlags_NR_FOSE_COSC), in StringTieTask()
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/ |
| H A D | ExportSequencesTask.cpp | 47 : Task(tr("Export selected sequences from alignment"), TaskFlags_NR_FOSE_COSC), in ExportSequencesTask()
|