| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/vdb/ |
| H A D | SYS-224064.cpp | 80 CALL(VTableCreateCursorRead(ref_table, &ref_cursor)); in LowLevelTest()
91 CALL(VTableCreateCursorRead(align_table, &align_cursor)); in LowLevelTest()
106 CALL(VTableCreateCursorRead(seq_table, &seq_cursor)); in LowLevelTest()
|
| H A D | VDB_Fixture.hpp | 121 rc = VTableCreateCursorRead(tbl, &curs); in Setup()
|
| H A D | test-blob-val.cpp | 90 THROW_ON_RC ( VTableCreateCursorRead ( m_tbl, & cursor ) ); in OpenSequenceTblCursor()
|
| H A D | test-VDB-3418.cpp | 60 if (VTableCreateCursorRead(tbl, &curs)) throw std::runtime_error("VTableCreateCursorRead"); in Cursor()
|
| H A D | WVDB_Fixture.hpp | 120 THROW_ON_RC ( VTableCreateCursorRead ( table, & ret ) ); in OpenTable()
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/vdb/ |
| H A D | SYS-224064.cpp | 80 CALL(VTableCreateCursorRead(ref_table, &ref_cursor)); in LowLevelTest()
91 CALL(VTableCreateCursorRead(align_table, &align_cursor)); in LowLevelTest()
106 CALL(VTableCreateCursorRead(seq_table, &seq_cursor)); in LowLevelTest()
|
| H A D | VDB_Fixture.hpp | 121 rc = VTableCreateCursorRead(tbl, &curs); in Setup()
|
| H A D | test-blob-val.cpp | 90 THROW_ON_RC ( VTableCreateCursorRead ( m_tbl, & cursor ) ); in OpenSequenceTblCursor()
|
| H A D | test-VDB-3418.cpp | 60 if (VTableCreateCursorRead(tbl, &curs)) throw std::runtime_error("VTableCreateCursorRead"); in Cursor()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/ |
| H A D | row_by_row.c | 120 rc_t rc = VTableCreateCursorRead( tab_1, &cur_1 ); in rbr_diff_columns()
128 rc = VTableCreateCursorRead( tab_2, &cur_2 ); in rbr_diff_columns()
|
| H A D | col_by_col.c | 164 rc = VTableCreateCursorRead( tab_1, &cur_1 ); in cbc_diff_columns()
172 rc = VTableCreateCursorRead( tab_2, &cur_2 ); in cbc_diff_columns()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/test/samline/ |
| H A D | refbases.c | 102 rc = VTableCreateCursorRead( tab, &cur ); in read_refbases()
164 rc = VTableCreateCursorRead( tab, &cur ); in ref_len()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ |
| H A D | ref-preserve_qual.c | 171 rc = VTableCreateCursorRead( atbl, &acurs ); in OpenAlignCursor()
211 rc = VTableCreateCursorRead( tbl, &curs ); in NodeLoadIDs()
280 rc_t rc = VTableCreateCursorRead( tbl, &curs ); in NodeMake()
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/ |
| H A D | ref-preserve_qual.c | 171 rc = VTableCreateCursorRead( atbl, &acurs ); in OpenAlignCursor()
211 rc = VTableCreateCursorRead( tbl, &curs ); in NodeLoadIDs()
280 rc_t rc = VTableCreateCursorRead( tbl, &curs ); in NodeMake()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/ |
| H A D | spot_position.c | 51 rc = VTableCreateCursorRead( self->table, &self->cursor ); in make_spot_pos()
|
| H A D | ref_exclude.c | 176 rc_t rc = VTableCreateCursorRead ( node->tab, &temp_cursor ); in detect_read_len()
239 rc_t rc = VTableCreateCursorRead ( node->tab, &node->cur ); in prepare_ref_node()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/ |
| H A D | xcheck-ref-align.c | 299 rc = VTableCreateCursorRead ( ref_tbl, & ref_curs ); in CrossCheckRefAlignTblInt()
305 rc = VTableCreateCursorRead ( align_tbl, & align_curs ); in CrossCheckRefAlignTblInt()
|
| H A D | csra-pair.c | 170 rc = VTableCreateCursorRead ( src, & curs ); in cSRAPairGetTblMember()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/ |
| H A D | check-corrupt.cpp | 411 rc = VTableCreateCursorRead( pa_table, &pa_cursor ); in checkAccession()
424 rc = VTableCreateCursorRead( sa_table, &sa_cursor ); in checkAccession()
437 rc = VTableCreateCursorRead( seq_table, &seq_cursor ); in checkAccession()
|
| H A D | vdb-validate.c | 826 rce = VTableCreateCursorRead(tbl, &curs); in tableConsistCheck()
989 rc_t rc = VTableCreateCursorRead(tbl, &curs); in sra_dbcc_fastq()
1046 rc = VTableCreateCursorRead(tbl, &curs); in VTable_get_platform()
1174 rc_t rc = VTableCreateCursorRead(tbl, &curs);
1494 rc = VTableCreateCursorRead(align, &acurs); in ric_align_ref_and_align()
1506 rc = VTableCreateCursorRead(ref, &bcurs); in ric_align_ref_and_align()
1577 rc = VTableCreateCursorRead(pri, &acurs); in ric_align_seq_and_pri()
1588 rc = VTableCreateCursorRead(seq, &bcurs); in ric_align_seq_and_pri()
1677 rc2 = VTableCreateCursorRead(seq, &seq_cursor); in ridc_align_seq_pri_sec()
1698 rc2 = VTableCreateCursorRead(pri, &pri_cursor); in ridc_align_seq_pri_sec()
[all …]
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/ |
| H A D | get_platform.c | 37 rc_t rc = VTableCreateCursorRead( my_table, &my_cursor ); in get_platform_from_table()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/ |
| H A D | wgs_test.cpp | 270 CALL(VTableCreateCursorRead(table, &cursor));
323 CALL(VTableCreateCursorRead(table, &cursor));
354 CALL(VTableCreateCursorRead(table, &tinfo[i].cursor));
418 CALL(VTableCreateCursorRead(table, &cursor));
|
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/search/ |
| H A D | search-vdb.cpp | 118 rc = ::VTableCreateCursorRead(m_pVDBTable, &cursorRead.PtrConstRef()); in InitVDBRead()
141 rc = ::VTableCreateCursorRead(m_pVDBTable, &cursorRead.PtrConstRef());
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/ref-idx/ |
| H A D | coverage_iter.c | 113 rc = VTableCreateCursorRead( tbl, &self->curs ); in simple_coverage_iter_initialize()
317 rc = VTableCreateCursorRead( tbl, &self->curs ); in simple_alig_iter_initialize()
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/search/ |
| H A D | search-vdb.cpp | 118 rc = ::VTableCreateCursorRead(m_pVDBTable, &cursorRead.PtrConstRef()); in InitVDBRead()
141 rc = ::VTableCreateCursorRead(m_pVDBTable, &cursorRead.PtrConstRef());
|