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Searched refs:ValNodeAddInt (Results 1 – 25 of 67) sorted by relevance

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/dports/biology/ncbi-toolkit/ncbi/biostruc/
H A Dmmdbapi4.c688 ValNodeAddInt( NULL, in RefreshModelAsnMem()
694 ValNodeAddInt( NULL, in RefreshModelAsnMem()
700 ValNodeAddInt( NULL, in RefreshModelAsnMem()
791 pvnMid->next = ValNodeAddInt( NULL, in RefreshModelAsnMem()
796 pvnRid->next = ValNodeAddInt( NULL, in RefreshModelAsnMem()
801 pvnAid->next = ValNodeAddInt( NULL, in RefreshModelAsnMem()
806 pvnX->next = ValNodeAddInt(NULL, 0, iX); in RefreshModelAsnMem()
809 pvnY->next = ValNodeAddInt(NULL, 0, iY); in RefreshModelAsnMem()
818 pvnB11->next = ValNodeAddInt(NULL, 0, iZ); in RefreshModelAsnMem()
825 pvnB11->next = ValNodeAddInt(NULL, 0, iZ); in RefreshModelAsnMem()
[all …]
H A Dprunebsc.c566 ValNodeAddInt(&pvnIds, 0, mol_id); in PruneBiostruc()
585 ValNodeAddInt(&pvnIds, 0, currenthet->id); in PruneBiostruc()
593 ValNodeAddInt(&pvnIds, 0, currenthet->id); in PruneBiostruc()
H A Dvast2cn3d.c207 pvnFid = ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3D()
H A Dmkbioseq_vs.c359 ValNodeAddInt(&pvnThePoints, 0, bpresidx); in MakeBioseqs()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsalpedit.c592 ValNodeAddInt(&v_starts, 0, cur_start); in DenseSegInsert()
619 ValNodeAddInt(&v_starts, 0, cur_start); in DenseSegInsert()
622 ValNodeAddInt(&v_lens, 0, lens[i]); in DenseSegInsert()
638 ValNodeAddInt(&v_lens, 0, lens[i]); in DenseSegInsert()
682 ValNodeAddInt(&v_lens, 0, ins_len); in DenseSegInsert()
707 ValNodeAddInt(&v_starts, 0, cur_start); in DenseSegInsert()
710 ValNodeAddInt(&v_lens, 0, lens[i]); in DenseSegInsert()
775 ValNodeAddInt(&v_starts, 0, cur_start); in DenseSegInsert()
792 ValNodeAddInt(&head, 0, val); in store_data()
1236 ValNodeAddInt(&v_starts, 0, pos); in AttachSeqInAlign()
[all …]
H A Dacerdapi.c712 ValNodeAddInt (&list, 0, tiling_pos); in GetTransitionsFromGapInfo()
717 ValNodeAddInt (&list, 0, tiling_pos + seq_offset); in GetTransitionsFromGapInfo()
726 ValNodeAddInt (&list, 0, tiling_pos + seq_offset); in GetTransitionsFromGapInfo()
738 ValNodeAddInt (&list, 0, tiling_pos); in GetTransitionsFromGapInfo()
743 ValNodeAddInt (&list, 0, tiling_pos); in GetTransitionsFromGapInfo()
749 ValNodeAddInt (&list, 0, tiling_pos + seq_len - seq_pos); in GetTransitionsFromGapInfo()
H A Dviewmgr.c436 ValNodeAddInt(&pInfo->pUserKey2Row, UserKey, ViewMgr_xVRow2TRow(pVGlobal, in ViewMgr_SetRow()
966 ValNodeAddInt(&pInfo->pHiddenRows, (Nlm_Int2)Row, Row); in ViewMgr_SetHidden()
H A Dsalsap.c4278 ValNodeAddInt (&vnpfrom, 1, (Int4) 0); in multseqalign_from_pairseqalign()
4347 ValNodeAddInt (&vnpfrom, 1, (Int4) (*starttmp+*lenp)); in multseqalign_from_pairseqalign()
4349 ValNodeAddInt (&vnpfrom, 1, (Int4) *starttmp); in multseqalign_from_pairseqalign()
4392 ValNodeAddInt (&vnpstrand, 1, (Int4)(strandtmp)); in multseqalign_from_pairseqalign()
4449 ValNodeAddInt (&vnpfrom, 1, (Int4) (*starttmp+*lenp)); in multseqalign_from_pairseqalign()
4451 ValNodeAddInt (&vnpfrom, 1, (Int4) *starttmp); in multseqalign_from_pairseqalign()
4496 ValNodeAddInt (&vnpstrand, 1, (Int4)strandtmp); in multseqalign_from_pairseqalign()
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dsapcitfetch.c74 ValNodeAddInt (head, 0, pmid); in FindSfpCitPmids()
144 ValNodeAddInt (&(pdp->pub), PUB_PMid, pmid); in ProcessOneSeqAnnot()
H A Dasn2fsa.c106 vnp = ValNodeAddInt (&last, 0, uid); in AddUidToQueue()
109 requested_uid_list = ValNodeAddInt (NULL, 0, uid); in AddUidToQueue()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dtaxblast.c815 ValNodeAddInt (&hitlists[taxoff], 0, i); in GetOrgData()
948 ValNodeAddInt (&nodeobj->orglist, 0, i); in GetTreeData()
969 ValNodeAddInt (&nodeobj->orglist, 0, i); in GetTreeData()
990 ValNodeAddInt (&nodeobj->orglist, 0, i); in GetTreeData()
1020 ValNodeAddInt (&vnp, 0, vnp1->data.intvalue); in ValNodeDiff()
1029 ValNodeAddInt (&vnp, 0, val1); in ValNodeDiff()
1054 ValNodeAddInt (to, 0, from->data.intvalue); in ValNodeIntCpy()
1059 ValNodeAddInt (to, 0, from->data.intvalue); in ValNodeIntCpy()
H A Dblastool.c3257 ValNodeAddInt(vnpp, 0, start); in slp_callback()
3258 ValNodeAddInt(vnpp, 1, stop); in slp_callback()
3295 ValNodeAddInt(&vnp, 1, -1); in BlastSeqLocFillDoubleIntEx()
3296 ValNodeAddInt(&vnp, 0, max_length); in BlastSeqLocFillDoubleIntEx()
3336 ValNodeAddInt(&vnp, 1, -1); in BlastSeqLocFillDoubleIntEx()
3357 ValNodeAddInt(&vnp, 1, -1); in BlastSeqLocFillDoubleIntRev()
3358 ValNodeAddInt(&vnp, 0, max_length); in BlastSeqLocFillDoubleIntRev()
H A Dblastutl.c1914 ValNodeAddInt(&seqid, SEQID_GI, gi); in BlastGetFirstGiofSubset()
1942 ValNodeAddInt(&seqid, SEQID_GI, gi); in BlastGetFirstGiofSubset()
1996 ValNodeAddInt(&gi_list, SEQID_GI, blast_gi_list->gi_list_pointer[current]->gi); in BlastGetAllowedGis()
2046 ValNodeAddInt(&gi_list, SEQID_GI, gi); in BlastGetAllowedGis()
2091 ValNodeAddInt(&gi_list, SEQID_GI, gi); in BlastGetAllowedGis()
2096 ValNodeAddInt(&gi_list, SEQID_GI, gi); in BlastGetAllowedGis()
5546 ValNodeAddInt(&other_returns, EFF_HSP_LENGTH, search->length_adjustment); in BlastOtherReturnsPrepare()
11425 ValNodeAddInt(&vnp, 1, -1); in BlastNtFindWords()
11427 ValNodeAddInt(&vnp, 0, len); in BlastNtFindWords()
11603 ValNodeAddInt(&vnp, 1, -1); in BlastFindWords()
[all …]
/dports/biology/ncbi-toolkit/ncbi/biostruc/newVSch/
H A Dvast2cn3dDB_comb.cpp260 if (JobID != "") ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
286 ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
321 ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
/dports/biology/ncbi-toolkit/ncbi/cn3d/
H A Dcn3dmsel.c221 ValNodeAddInt(&pvnModelNos, pdnmlThis->choice, in PickedModels()
/dports/biology/ncbi-toolkit/ncbi/biostruc/newvast/
H A Dvast2cn3dDB.c367 if (JobID) ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
399 ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
433 ValNodeAddInt(&pvnFids, 0, Fid); in VastToCn3DAndAli()
H A Dmkbioseq_vs.c362 ValNodeAddInt(&pvnThePoints, 0, bpresidx); in MakeBioseqs()
/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dlayout.c2108 ValNodeAddInt(pleft_list, 0, left); in is_level_overlap()
2109 ValNodeAddInt(pright_list, 0, right); in is_level_overlap()
2132 ValNodeAddInt(&left_list, 1, left); in find_align_line_number()
2133 ValNodeAddInt(&right_list, 1, right); in find_align_line_number()
H A Dvsmfile.c1255 ValNodeAddInt (&entity_list, 0, sel->entityID); in VSMGenericAsnSave()
1400 ValNodeAddInt (&entity_list, 0, sel->entityID); in VSMSaveSetsAsFiles()
H A Dseqpanel.c472 ValNodeAddInt(&ref[j]->pFeatList[idx], fcontext.seqfeattype, fcontext.itemID); in FillFeatureInfo()
473 …if (coding) ValNodeAddInt(&ref[j]->pFeatList[idx], PROT_PRODUCT_TYPE, fcontext.itemID); /* add spa… in FillFeatureInfo()
3172 … ValNodeAddInt(&(feature_lists[j - sequenceLineOffset]), fcontext.seqfeattype, fcontext.itemID); in GetSeqChapterFeatureInfo()
7162 ValNodeAddInt (loc_list, 0, position); in MatchProc()
7173 ValNodeAddInt (loc_list, 0, position); in ProtMatchProc()
7270 ValNodeAddInt (&new_list, 0, vnp2->data.intvalue); in MergeIntLists()
7275 ValNodeAddInt (&new_list, 0, vnp1->data.intvalue); in MergeIntLists()
7280 ValNodeAddInt (&new_list, 0, vnp1->data.intvalue); in MergeIntLists()
7285 ValNodeAddInt (&new_list, 0, vnp2->data.intvalue); in MergeIntLists()
7291 ValNodeAddInt (&new_list, 0, vnp1->data.intvalue); in MergeIntLists()
[all …]
H A Dsalfiles.c80 ValNodeAddInt (&charp, 1, (Int4)c); in FGetLine()
523 ValNodeAddInt (&fromp, 1, (Int4)(val+1)); in get_lens_fromseqalign()
549 ValNodeAddInt (&fromp, 1, (Int4)(val+1)); in get_lens_fromseqalign()
552 ValNodeAddInt (&fromp, 1, (Int4)(-1)); in get_lens_fromseqalign()
/dports/biology/ncbi-toolkit/ncbi/corelib/
H A Dncbimisc.h212 NLM_EXTERN ValNodePtr LIBCALL ValNodeAddInt PROTO((ValNodePtr PNTR head, Nlm_Int2 choice, Nlm_Int4…
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dstreamer.c746 ValNodeAddInt (&pub, PUB_PMid, pmid); in LookupAnArticleFuncNew()
/dports/biology/ncbi-toolkit/ncbi/biostruc/newmmdb/
H A Dmmdbsrv.c457 if (Uid) ValNodeAddInt(ppvnUIDS, 0, Uid); in MakeUIDList()
462 if (Uid) ValNodeAddInt(ppvnUIDS, 0, Uid); in MakeUIDList()
/dports/biology/ncbi-toolkit/ncbi/access/
H A Dtax3api.c286 ValNodeAddInt (&(t2rp->request), 1, taxid); in CreateTaxon3Request()
325 ValNodeAddInt (&(t3rp->request), T3Request_taxid, vnp->data.intvalue); in CreateMultiTaxon3Request()
353 ValNodeAddInt (&data, T3Request_join, vnp->data.intvalue); in CreateJoinRequest()
3552 ValNodeAddInt ((ValNodePtr PNTR) data, 0, dbtag->tag->id); in CollectTaxIds()

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