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Searched refs:ValNodeSort (Results 1 – 25 of 50) sorted by relevance

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/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dsortbyquote.c166 head = ValNodeSort (head, RevSortStringByQuoted); in ProcessFileToSort()
168 head = ValNodeSort (head, SortStringByQuoted); in ProcessFileToSort()
H A Dsubfuse.c215 head = ValNodeSort (head, SortVnpByNaturalCI); in Main()
H A Dsapcitfetch.c122 head = ValNodeSort (head, SortByIntvalue); in ProcessOneSeqAnnot()
H A Dreplicon.c329 t.chr_list = ValNodeSort (t.chr_list, SortVnpByString); in Main()
H A Dreblobber.c957 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in AddFeaturesToGroup()
1115 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ApplySrcTableToGroup()
1259 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ApplyQualityScoresToGroup()
1466 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in CopyDataFromOriginals()
1890 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ProcessSingletons()
H A Dsqn2agp.c563 sfp->conlenhead = ValNodeSort (sfp->conlenhead, SortByIntvalue); in DoWriteAgpAndFsa()
564 sfp->gaplenhead = ValNodeSort (sfp->gaplenhead, SortByIntvalue); in DoWriteAgpAndFsa()
H A Didcleanscan.c198 ggd.vnp = ValNodeSort (ggd.vnp, SortSeqGraphProc); in GetSeqGraphsOnBioseq()
H A Dsrc_chk.c282 tmp_list = ValNodeSort (tmp_list, SortVnpByFetchItem); in MakeFetchItemIndex()
H A Dtbl_chk.c279 tmp_list = ValNodeSort (tmp_list, SortVnpByFetchItem); in MakeFetchItemIndex()
/dports/biology/ncbi-toolkit/ncbi/biostruc/cblast/
H A Dcblastutil.c956 nip = ValNodeSort(nip, SortNeighborInfo); in GetRankedNeighborInfoFD()
1008 nip = ValNodeSort(nip, SortNeighborInfo); in GetRankedNeighborInfoFF()
1296 Amaprow_head = ValNodeSort(Amaprow_head, SortMapInfoByAlgPos); in FillCdInfo()
1313 Amaprow_head = ValNodeSort(Amaprow_head, SortMapInfoByAlgPos); in FillCdInfo()
1425 pdbList = (ValNodePtr)ValNodeSort((ValNodePtr)piip->pdbList, SortNeighborInfo); in SortPDBIdInfoWithRank()
1426 pdb_giList = (ValNodePtr)ValNodeSort(piip->PDBgiList, SortNeighborInfo); in SortPDBIdInfoWithRank()
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsqnutil3.c10519 list1 = ValNodeSort (list1, SortVnpByString); in GetGeneStringMatch()
10520 list2 = ValNodeSort (list2, SortVnpByString); in GetGeneStringMatch()
17691 list = ValNodeSort (list, SortVnpByString); in DuplicateQualNew()
21097 seq_list = ValNodeSort (seq_list, SortVnpByString); in InsertMissingFeatureCountsWithSeqIdTxt()
26200 label_ls = ValNodeSort(label_ls, SortVnpByString); in GetFeatureList()
29197 changed = ValNodeSort (changed, SortVnpByString); in SwitchSuspiciousStructuredCommentPrefix()
29281 sort1 = ValNodeSort (sort1, SortVnpByPCRPrimer); in CmpPCRPrimerList()
29282 sort2 = ValNodeSort (sort2, SortVnpByPCRPrimer); in CmpPCRPrimerList()
29352 list = ValNodeSort (list, SortVnpByPCRReaction); in HasDuplicatePrimerPair()
29426 list = ValNodeSort (list, SortVnpByPCRReaction); in RemoveDuplicatePCRPrimerPairsFromBioSource()
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H A Dvalapi.c122 list = ValNodeSort (list, SortVnpByFieldRule); in SortFieldsInCommentRule()
451 list = ValNodeSort (list, SortVnpByUserField); in SortFieldsInUserObject()
H A Dlsqfetch.c1707 head = ValNodeSort (head, SortVnpByString); in CreateFastaIndex()
2265 aid.head = ValNodeSort (aid.head, SortVnpByString); in CreateBinaryAsnIndex()
2362 aid.head = ValNodeSort (aid.head, SortVnpByString); in CreateTextAsnIndex()
2566 bi.head = ValNodeSort (bi.head, SortVnpByBuildIdxSeqid); in CreateMasterAsnIndex()
H A Dsqnutil1.c658 list = ValNodeSort (list, SortCommonTitle); in PromoteCommonTitlesSetCallback()
1939 list = ValNodeSort (list, SortVnpByString); in KeyTagInit()
9206 pdp->pub = ValNodeSort (pdp->pub, SortByPubType); in NormalizePubdesc()
10216 head = ValNodeSort (head, SortVnpByGssp); in SortGoTerms()
10806 grp->db = ValNodeSort (grp->db, SortDbxref); in CleanupFeatureStrings()
10886 prp->db = ValNodeSort (prp->db, SortDbxref); in CleanupFeatureStrings()
11476 orp->db = ValNodeSort (orp->db, SortDbxref); in CleanupFeatureStrings()
11717 orp->db = ValNodeSort (orp->db, SortDbxref); in CleanupDescriptorStrings()
13551 sfp->dbxref = ValNodeSort (sfp->dbxref, SortDbxref); in CleanUpSeqFeat()
15146 sfp->dbxref = ValNodeSort (sfp->dbxref, SortDbxref); in SortSeqFeatFields()
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H A Dasn2gnb6.c3862 ic_code_list = ValNodeSort (ic_code_list, SortVnpByInstCode); in SetupInstCodeNameTable()
6423 index->authors = ValNodeSort (index->authors, SortVnpByString); in FormatSlashBlock()
6426 index->genes = ValNodeSort (index->genes, SortVnpByString); in FormatSlashBlock()
6429 index->journals = ValNodeSort (index->journals, SortVnpByString); in FormatSlashBlock()
6432 index->keywords = ValNodeSort (index->keywords, SortVnpByString); in FormatSlashBlock()
6435 index->secondaries = ValNodeSort (index->secondaries, SortVnpByString); in FormatSlashBlock()
H A Dacerdapi.c429 pair_list = ValNodeSort (pair_list, SortSeqIdPairList); in ReadSeqIdPairListFromFile()
H A Dmacroapi.c1501 tmp_list = ValNodeSort (tmp_list, SortVnpByString); in AddImportFeaturesToChoiceList()
2461 tmp = ValNodeSort (tmp, SortVnpByString); in GetSourceQualList()
2721 list = ValNodeSort (list, SortVnpByString); in GetLocationList()
16008 bsp_list = ValNodeSort (bsp_list, SortVnpByObject); in BioseqListForObjectList()
27148 tmp_list = ValNodeSort (tmp_list, SortVnpByString); in AddAllDescriptorsToChoiceList()
29932 added = ValNodeSort (added, SortVnpByString); in AutoApplyStructuredCommentPrefixes()
35680 vnbp->head = ValNodeSort(vnbp->head, compar); in ValNodeSortBlock()
40209 list1 = ValNodeSort(list1, SortVnpByRuleSortRule); in FindDiffsBetweenRuleSets()
40211 list2 = ValNodeSort(list2, SortVnpByRuleSortRule); in FindDiffsBetweenRuleSets()
40244 list1 = ValNodeSort (list1, SortVnpByRuleSortPos); in FindDiffsBetweenRuleSets()
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H A Dsalpedit.c2115 h_list = ValNodeSort(h_list, CompareChainProc); in sort_list_order()
3015 return ValNodeSort(seg_list, SegOrderCompProc); in find_overlap_diagnol()
3478 return ValNodeSort(list, AlignOverlapCompProc); in build_overlap_list()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dvecscrn.c496 my_seqloc = (SeqLocPtr) ValNodeSort ((ValNodePtr) my_seqloc, MySeqLocSortByStartPosition); in CombineSeqLoc()
560 my_seqloc = (SeqLocPtr) ValNodeSort ((ValNodePtr) my_seqloc, MySeqLocSortByStartPosition); in GetInterveningSeqLoc()
/dports/biology/ncbi-toolkit/ncbi/corelib/
H A Dncbimisc.h224 NLM_EXTERN ValNodePtr LIBCALL ValNodeSort PROTO((ValNodePtr list, int (LIBCALLBACK *compar) (VoidP…
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin8.c7289 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow1); in MarkSubAlignments()
7317 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow1); in SeqAlignSortListMarkRepeats()
7319 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow2); in SeqAlignSortListMarkRepeats()
7913 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList()
7916 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList()
7923 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList()
7936 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList()
7943 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList()
7950 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList()
7965 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList()
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H A Dsequin3.c5652 result_list = ValNodeSort (result_list, SortGapLocations); in DeltaLocToData()
8463 ec_rep_list = ValNodeSort (ec_rep_list, SortVnpByEcBefore); in SetupECReplacementTable()
8830 ic_rep_list = ValNodeSort (ic_rep_list, SortVnpByInstituteName); in SetupInstituteCodeNameTable()
14660 head = ValNodeSort (head, SortVnpByGssp); in SortGoTerms()
22535 b->src_field_list = ValNodeSort (b->src_field_list, SortVnpByFieldTypeAndSourceQualifier); in PopulateBiosampleData()
22622 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffBiosampleIdThenFieldThenVal); in RemoveIdenticalMismatchesForDifferentSeqIds()
22637 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffField); in RemoveColumnsWithNoConflicts()
22710 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffField); in ReportAndRemoveSequenceSampleConflictsInList()
22866 b->biosample_ids = ValNodeSort (b->biosample_ids, SortVnpByString); in GetBiosampleBioSourceDiffs()
23021 b->src_diff_list = ValNodeSort (b->src_diff_list, SortVnpByFieldDiffField); in MakeBioSampleUpdateTable()
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/dports/biology/ncbi-toolkit/ncbi/access/
H A Dpmfapi.c3727 fid.gis = ValNodeSort (fid.gis, SortByIntvalue); in GiRevHistLookupFarSeqIDs()
3747 fid.accns = ValNodeSort (fid.accns, SortVnpBySeqId); in GiRevHistLookupFarSeqIDs()
3778 fid.strs = ValNodeSort (fid.strs, SortVnpByString); in GiRevHistLookupFarSeqIDs()
H A Dent2api.c661 head = ValNodeSort (head, SortVnpByString); in GetE2info()
2557 menuhead = ValNodeSort (menuhead, SortVnpByStr); in ValidateEntrez2InfoPtrExExEx()
/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dvsmfile.c669 prot_list = ValNodeSort (prot_list, SortProtByName); in WriteSortedProteinsToFile()

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