/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | sortbyquote.c | 166 head = ValNodeSort (head, RevSortStringByQuoted); in ProcessFileToSort() 168 head = ValNodeSort (head, SortStringByQuoted); in ProcessFileToSort()
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H A D | subfuse.c | 215 head = ValNodeSort (head, SortVnpByNaturalCI); in Main()
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H A D | sapcitfetch.c | 122 head = ValNodeSort (head, SortByIntvalue); in ProcessOneSeqAnnot()
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H A D | replicon.c | 329 t.chr_list = ValNodeSort (t.chr_list, SortVnpByString); in Main()
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H A D | reblobber.c | 957 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in AddFeaturesToGroup() 1115 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ApplySrcTableToGroup() 1259 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ApplyQualityScoresToGroup() 1466 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in CopyDataFromOriginals() 1890 file_list.head = ValNodeSort (file_list.head, SortVnpByString); in ProcessSingletons()
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H A D | sqn2agp.c | 563 sfp->conlenhead = ValNodeSort (sfp->conlenhead, SortByIntvalue); in DoWriteAgpAndFsa() 564 sfp->gaplenhead = ValNodeSort (sfp->gaplenhead, SortByIntvalue); in DoWriteAgpAndFsa()
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H A D | idcleanscan.c | 198 ggd.vnp = ValNodeSort (ggd.vnp, SortSeqGraphProc); in GetSeqGraphsOnBioseq()
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H A D | src_chk.c | 282 tmp_list = ValNodeSort (tmp_list, SortVnpByFetchItem); in MakeFetchItemIndex()
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H A D | tbl_chk.c | 279 tmp_list = ValNodeSort (tmp_list, SortVnpByFetchItem); in MakeFetchItemIndex()
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/dports/biology/ncbi-toolkit/ncbi/biostruc/cblast/ |
H A D | cblastutil.c | 956 nip = ValNodeSort(nip, SortNeighborInfo); in GetRankedNeighborInfoFD() 1008 nip = ValNodeSort(nip, SortNeighborInfo); in GetRankedNeighborInfoFF() 1296 Amaprow_head = ValNodeSort(Amaprow_head, SortMapInfoByAlgPos); in FillCdInfo() 1313 Amaprow_head = ValNodeSort(Amaprow_head, SortMapInfoByAlgPos); in FillCdInfo() 1425 pdbList = (ValNodePtr)ValNodeSort((ValNodePtr)piip->pdbList, SortNeighborInfo); in SortPDBIdInfoWithRank() 1426 pdb_giList = (ValNodePtr)ValNodeSort(piip->PDBgiList, SortNeighborInfo); in SortPDBIdInfoWithRank()
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | sqnutil3.c | 10519 list1 = ValNodeSort (list1, SortVnpByString); in GetGeneStringMatch() 10520 list2 = ValNodeSort (list2, SortVnpByString); in GetGeneStringMatch() 17691 list = ValNodeSort (list, SortVnpByString); in DuplicateQualNew() 21097 seq_list = ValNodeSort (seq_list, SortVnpByString); in InsertMissingFeatureCountsWithSeqIdTxt() 26200 label_ls = ValNodeSort(label_ls, SortVnpByString); in GetFeatureList() 29197 changed = ValNodeSort (changed, SortVnpByString); in SwitchSuspiciousStructuredCommentPrefix() 29281 sort1 = ValNodeSort (sort1, SortVnpByPCRPrimer); in CmpPCRPrimerList() 29282 sort2 = ValNodeSort (sort2, SortVnpByPCRPrimer); in CmpPCRPrimerList() 29352 list = ValNodeSort (list, SortVnpByPCRReaction); in HasDuplicatePrimerPair() 29426 list = ValNodeSort (list, SortVnpByPCRReaction); in RemoveDuplicatePCRPrimerPairsFromBioSource() [all …]
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H A D | valapi.c | 122 list = ValNodeSort (list, SortVnpByFieldRule); in SortFieldsInCommentRule() 451 list = ValNodeSort (list, SortVnpByUserField); in SortFieldsInUserObject()
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H A D | lsqfetch.c | 1707 head = ValNodeSort (head, SortVnpByString); in CreateFastaIndex() 2265 aid.head = ValNodeSort (aid.head, SortVnpByString); in CreateBinaryAsnIndex() 2362 aid.head = ValNodeSort (aid.head, SortVnpByString); in CreateTextAsnIndex() 2566 bi.head = ValNodeSort (bi.head, SortVnpByBuildIdxSeqid); in CreateMasterAsnIndex()
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H A D | sqnutil1.c | 658 list = ValNodeSort (list, SortCommonTitle); in PromoteCommonTitlesSetCallback() 1939 list = ValNodeSort (list, SortVnpByString); in KeyTagInit() 9206 pdp->pub = ValNodeSort (pdp->pub, SortByPubType); in NormalizePubdesc() 10216 head = ValNodeSort (head, SortVnpByGssp); in SortGoTerms() 10806 grp->db = ValNodeSort (grp->db, SortDbxref); in CleanupFeatureStrings() 10886 prp->db = ValNodeSort (prp->db, SortDbxref); in CleanupFeatureStrings() 11476 orp->db = ValNodeSort (orp->db, SortDbxref); in CleanupFeatureStrings() 11717 orp->db = ValNodeSort (orp->db, SortDbxref); in CleanupDescriptorStrings() 13551 sfp->dbxref = ValNodeSort (sfp->dbxref, SortDbxref); in CleanUpSeqFeat() 15146 sfp->dbxref = ValNodeSort (sfp->dbxref, SortDbxref); in SortSeqFeatFields() [all …]
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H A D | asn2gnb6.c | 3862 ic_code_list = ValNodeSort (ic_code_list, SortVnpByInstCode); in SetupInstCodeNameTable() 6423 index->authors = ValNodeSort (index->authors, SortVnpByString); in FormatSlashBlock() 6426 index->genes = ValNodeSort (index->genes, SortVnpByString); in FormatSlashBlock() 6429 index->journals = ValNodeSort (index->journals, SortVnpByString); in FormatSlashBlock() 6432 index->keywords = ValNodeSort (index->keywords, SortVnpByString); in FormatSlashBlock() 6435 index->secondaries = ValNodeSort (index->secondaries, SortVnpByString); in FormatSlashBlock()
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H A D | acerdapi.c | 429 pair_list = ValNodeSort (pair_list, SortSeqIdPairList); in ReadSeqIdPairListFromFile()
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H A D | macroapi.c | 1501 tmp_list = ValNodeSort (tmp_list, SortVnpByString); in AddImportFeaturesToChoiceList() 2461 tmp = ValNodeSort (tmp, SortVnpByString); in GetSourceQualList() 2721 list = ValNodeSort (list, SortVnpByString); in GetLocationList() 16008 bsp_list = ValNodeSort (bsp_list, SortVnpByObject); in BioseqListForObjectList() 27148 tmp_list = ValNodeSort (tmp_list, SortVnpByString); in AddAllDescriptorsToChoiceList() 29932 added = ValNodeSort (added, SortVnpByString); in AutoApplyStructuredCommentPrefixes() 35680 vnbp->head = ValNodeSort(vnbp->head, compar); in ValNodeSortBlock() 40209 list1 = ValNodeSort(list1, SortVnpByRuleSortRule); in FindDiffsBetweenRuleSets() 40211 list2 = ValNodeSort(list2, SortVnpByRuleSortRule); in FindDiffsBetweenRuleSets() 40244 list1 = ValNodeSort (list1, SortVnpByRuleSortPos); in FindDiffsBetweenRuleSets() [all …]
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H A D | salpedit.c | 2115 h_list = ValNodeSort(h_list, CompareChainProc); in sort_list_order() 3015 return ValNodeSort(seg_list, SegOrderCompProc); in find_overlap_diagnol() 3478 return ValNodeSort(list, AlignOverlapCompProc); in build_overlap_list()
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | vecscrn.c | 496 my_seqloc = (SeqLocPtr) ValNodeSort ((ValNodePtr) my_seqloc, MySeqLocSortByStartPosition); in CombineSeqLoc() 560 my_seqloc = (SeqLocPtr) ValNodeSort ((ValNodePtr) my_seqloc, MySeqLocSortByStartPosition); in GetInterveningSeqLoc()
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/dports/biology/ncbi-toolkit/ncbi/corelib/ |
H A D | ncbimisc.h | 224 NLM_EXTERN ValNodePtr LIBCALL ValNodeSort PROTO((ValNodePtr list, int (LIBCALLBACK *compar) (VoidP…
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/dports/biology/ncbi-toolkit/ncbi/sequin/ |
H A D | sequin8.c | 7289 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow1); in MarkSubAlignments() 7317 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow1); in SeqAlignSortListMarkRepeats() 7319 *list = ValNodeSort (*list, SortVnpBySeqAlignSortRow2); in SeqAlignSortListMarkRepeats() 7913 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList() 7916 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList() 7923 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList() 7936 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList() 7943 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList() 7950 list = ValNodeSort (list, SortVnpBySeqAlignSortRow2); in SelectBestRepeatsFromList() 7965 list = ValNodeSort (list, SortVnpBySeqAlignSortRow1); in SelectBestRepeatsFromList() [all …]
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H A D | sequin3.c | 5652 result_list = ValNodeSort (result_list, SortGapLocations); in DeltaLocToData() 8463 ec_rep_list = ValNodeSort (ec_rep_list, SortVnpByEcBefore); in SetupECReplacementTable() 8830 ic_rep_list = ValNodeSort (ic_rep_list, SortVnpByInstituteName); in SetupInstituteCodeNameTable() 14660 head = ValNodeSort (head, SortVnpByGssp); in SortGoTerms() 22535 b->src_field_list = ValNodeSort (b->src_field_list, SortVnpByFieldTypeAndSourceQualifier); in PopulateBiosampleData() 22622 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffBiosampleIdThenFieldThenVal); in RemoveIdenticalMismatchesForDifferentSeqIds() 22637 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffField); in RemoveColumnsWithNoConflicts() 22710 *diff_list = ValNodeSort (*diff_list, SortVnpByFieldDiffField); in ReportAndRemoveSequenceSampleConflictsInList() 22866 b->biosample_ids = ValNodeSort (b->biosample_ids, SortVnpByString); in GetBiosampleBioSourceDiffs() 23021 b->src_diff_list = ValNodeSort (b->src_diff_list, SortVnpByFieldDiffField); in MakeBioSampleUpdateTable() [all …]
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/dports/biology/ncbi-toolkit/ncbi/access/ |
H A D | pmfapi.c | 3727 fid.gis = ValNodeSort (fid.gis, SortByIntvalue); in GiRevHistLookupFarSeqIDs() 3747 fid.accns = ValNodeSort (fid.accns, SortVnpBySeqId); in GiRevHistLookupFarSeqIDs() 3778 fid.strs = ValNodeSort (fid.strs, SortVnpByString); in GiRevHistLookupFarSeqIDs()
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H A D | ent2api.c | 661 head = ValNodeSort (head, SortVnpByString); in GetE2info() 2557 menuhead = ValNodeSort (menuhead, SortVnpByStr); in ValidateEntrez2InfoPtrExExEx()
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/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | vsmfile.c | 669 prot_list = ValNodeSort (prot_list, SortProtByName); in WriteSortedProteinsToFile()
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