/dports/biology/hyphy/hyphy-2.5.33/src/core/include/ |
H A D | formula.h | 71 class _Formula { 106 _Formula (void); 113 _Formula (_Formula const & rhs); 114 const _Formula & operator = (_Formula const & rhs); 233 (node<long>*, long,_SimpleList const &, _Formula * const *, _Formula&); 241 virtual _Formula const operator + (const _Formula&); 242 virtual _Formula const operator - (const _Formula&); 243 virtual _Formula const operator * (const _Formula&); 244 virtual _Formula const operator / (const _Formula&); 245 virtual _Formula const operator ^ (const _Formula&); [all …]
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H A D | variable.h | 92 void SetFormula (_Formula&); // set the variable to a new formula 98 const _Formula * get_constraint (void) const { in get_constraint() 184 _Formula* varFormula;
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H A D | category.h | 154 _Formula& GetDensity(void) { in GetDensity() 158 _Formula& GetCumulative(void) { in GetCumulative() 208 _Formula density,
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H A D | matrix.h | 67 class _Formula; variable 232 void MStore (long, long, _Formula&, long = -1); 240 bool ValidateFormulaEntries (bool (long, long, _Formula*)); 243 void MStore (HBLObjectRef, HBLObjectRef, _Formula&, long = HY_OP_CODE_NONE); 363 void StoreFormula (long, long, _Formula&, bool = true, bool = true); 459 _Formula* GetFormula (long, long) const;
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H A D | parser.h | 108 HBLObjectRef FetchObjectFromFormulaByType (_Formula&, const unsigned long, long = -1, _St… 217 hyFloat TrapezoidLevelK (_Formula&, _Variable*, hyFloat, hyFloat, long); 218 hyFloat TrapezoidLevelKSimple (_Formula&, _Variable*, hyFloat, hyFloat, long, _SimpleFormulaDatu…
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H A D | operation.h | 56 class _Formula; variable 64 friend class _Formula; variable
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H A D | likefunc.h | 260 _Formula* HasComputingTemplate (void) const{ in HasComputingTemplate() 612 _Formula* computingTemplate; 710 _Formula myBody; 770 void StateCounterResultHandler (_Formula&, _SimpleList*,long&,long&,long,_Matrix&,_Matrix&);
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H A D | stack.h | 49 friend class _Formula; variable
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/dports/biology/hyphy/hyphy-2.5.33/src/core/ |
H A D | formula.cpp | 65 _Formula::_Formula (void) { in _Formula() function in _Formula 145 _Formula::_Formula (_Formula const& rhs) { in _Formula() function in _Formula 150 const _Formula& _Formula::operator = (_Formula const& rhs) { in operator =() 235 _Formula * res = new _Formula; in makeDynamic() 241 _Formula::~_Formula (void) { in ~_Formula() 345 _Formula* res = new _Formula (); in Differentiate() 2079 _Formula const _Formula::operator+ (const _Formula& operand2) { in operator +() 2084 _Formula const _Formula::operator- (const _Formula& operand2) { in operator -() 2089 _Formula const _Formula::operator* (const _Formula& operand2) { in operator *() 2094 _Formula const _Formula::operator/ (const _Formula& operand2) { in operator /() [all …]
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H A D | calcnode.cpp | 104 _Formula fg (*(_String*)expression, this); in InitializeCN() 760 _Formula * mf = GetExplicitFormModel(); in ConvertToSimpleMatrix() 776 _Formula * mf = GetExplicitFormModel(); in ConvertFromSimpleMatrix() 791 _Formula* _CalcNode::RecurseMC (long varToConstrain, node<long>* whereAmI, bool first, char roote… in RecurseMC() 812 return new _Formula (LocateVar(iVariables->get(f-1)),true); in RecurseMC() 825 _Formula** nodeConditions = new _Formula * [descendants-start]; in RecurseMC() 890 _Formula newConstraint; in RecurseMC() 911 _Formula *result = nodeConditions[k]; in RecurseMC()
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H A D | batchlan2.cpp | 775 _Formula nameForm (flaData,chain.nameSpacePrefix); in ExecuteCase54() 956 void _ElementaryCommand::appendCompiledFormulae(_Formula* f, _Formula *f2) { in appendCompiledFormulae() 975 _Formula* f = (_Formula*)simpleParameters.list_data[1], in DecompileFormulae() 976 *f2 = (_Formula*)simpleParameters.list_data[2] ; in DecompileFormulae() 990 _Formula* f = (_Formula*)simpleParameters.list_data[2]; in DecompileFormulae() 1001 _Formula* f = (_Formula*)simpleParameters.list_data[1]; in DecompileFormulae() 1135 …((_Formula*)modelMatrixIndices.list_data[modelID])->ScanFForVariables(theReceptacle, inclG, false,… in ScanModelForVariables() 1184 _Formula f, f2; in ScanStringExpressionForHBLFunctions()
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H A D | matrix.cpp | 384 _Formula * theTerm = new _Formula (term,theP); in _Matrix() 1010 _Formula ** formula_entires = (_Formula**)theData; in ValidateFormulaEntries() 2340 _Formula ** theFormulas = (_Formula**)theData; in ScanForVariables2() 2405 _Formula ** theFormulas = (_Formula**)theData; in ScanForVariables2() 2445 _Formula ** theFormulas = (_Formula**)theData; in IsConstant() 2469 _Formula ** theFormulas = (_Formula**)theData; in ProcessFormulas() 2722 _Formula ** theFormulas = (_Formula**)theData; in Evaluate() 3163 _Formula ** theFormulas = (_Formula**)theData; in ClearFormulae() 6585 _Formula * f = new _Formula (value); in MStore() 6591 _Formula * f = new _Formula (value); in MStore() [all …]
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H A D | batchlan.cpp | 364 _Formula nameForm (*data,theP); in GetStringFromFormula() 1473 _Formula *f = new _Formula, in TryToMakeSimple() 1548 _Formula f; in TryToMakeSimple() 1559 _Formula *cf = ((_Formula*)aStatement->simpleParameters(2)); in TryToMakeSimple() 2157 _Formula* f = (_Formula*)simpleParameters(2); in ~_ElementaryCommand() 2163 _Formula* f = (_Formula*)simpleParameters(2); in ~_ElementaryCommand() 2171 _Formula* f = (_Formula*)simpleParameters(i); in ~_ElementaryCommand() 2497 _Formula f, in ExecuteCase0() 2553 _Formula * expression = nil; in ExecuteCase4() 3438 _Formula * expression = nil; in Execute() [all …]
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H A D | variable.cpp | 86 varFormula = new _Formula(); in Duplicate() 205 varFormula = new _Formula (f); in _Variable() 638 void _Variable::SetFormula (_Formula& theF) { in SetFormula() 652 _Formula* right_hand_side = &theF; in SetFormula() 657 right_hand_side = new _Formula ((HBLObjectRef)theP->makeDynamic(),false); in SetFormula() 697 varFormula = new _Formula; in SetFormula()
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H A D | parser2.cpp | 204 long ExecuteFormula (_Formula*f , _Formula* f2, long code, long reference, _VariableContainer… in ExecuteFormula() 244 _Formula fFixed; in ExecuteFormula() 254 _Formula fFixed; in ExecuteFormula() 306 _Formula newF; in ExecuteFormula() 537 …gContext& parsingContext, long i, _Variable* lhs_variable, _Formula * f, char deref, _Formula &new… in _parserHelperHandleInlineBoundCases() 565 …gContext& parsingContext, long i, _Variable* lhs_variable, _Formula * f, char deref, _Formula &new… in _parserHelperHandleInlineAssignmentCases() 625 long Parse (_Formula* f, _String& s, _FormulaParsingContext& parsingContext, _Formula* f2) in Parse() 937 _Formula newF; in Parse() 965 f->Duplicate((_Formula const*)&newF); in Parse() 1108 _Formula newF; in Parse() [all …]
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H A D | fstring.cpp | 396 _Formula F; in Differentiate() 414 _Formula *DF = F.Differentiate (*X,true); in Differentiate() 534 _Formula evaluator (s, (_VariableContainer*)context->GetContext()); in Evaluate() 557 _Formula evaluator (s); in SubstituteAndSimplify() 561 _Formula pf (is_poly); in SubstituteAndSimplify() 787 fv = _Formula::ParseAndCompute (get_str(), true, NUMBER, context); in ExecuteSingleOp() 908 _Formula the_call; in Call()
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H A D | batchlanruntime.cpp | 178 _Formula parsed_expression; in _ProcessAnArgumentByType() 280 _Formula parsed_expression; in HandleDifferentiate() 323 _Formula parsed_expression; in HandleFindRootOrIntegrate() 1374 _Formula pattern, in HandleReplicateConstraint() 1396 _Formula * formulas [2] = {&lhs, &pattern}; in HandleReplicateConstraint() 1425 for (_Formula * f : formulas) { in HandleReplicateConstraint() 1643 _Formula rhs, lhs; in HandleReplicateConstraint() 2086 _Formula parsed_expression; in HandleAssert() 4235 _Formula *isExpressionBased = nil; in ExecuteCase31() 4278 isExpressionBased = new _Formula; in ExecuteCase31() [all …]
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/dports/graphics/quat/quat-1.20/gui/ |
H A D | MandelPreview.h | 28 int formula() const { return _Formula; } in formula() 30 { _Formula = v; CheckUpdate(); return; } in formula() 51 int _Maxiter, _Formula; variable
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H A D | MandelPreview.cxx | 49 _Maxiter(12), _Formula(0), _Bailout(16), _BailoutSQR(256), in MandelPreview() 288 switch (_Formula) { in CalcMPixel() 377 _pic_Formula = _Formula; in CalcImage() 388 || _pic_Bailout != _Bailout || _pic_Formula != _Formula) in CheckUpdate() 399 return (_Maxiter>0) && (_Bailout>=0.0) && (_Formula>=0) && (_Formula<=4); in isValid()
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/dports/graphics/quat-gui/quat-1.20/gui/ |
H A D | MandelPreview.h | 28 int formula() const { return _Formula; } in formula() 30 { _Formula = v; CheckUpdate(); return; } in formula() 51 int _Maxiter, _Formula; variable
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H A D | MandelPreview.cxx | 49 _Maxiter(12), _Formula(0), _Bailout(16), _BailoutSQR(256), in MandelPreview() 288 switch (_Formula) { in CalcMPixel() 377 _pic_Formula = _Formula; in CalcImage() 388 || _pic_Bailout != _Bailout || _pic_Formula != _Formula) in CheckUpdate() 399 return (_Maxiter>0) && (_Bailout>=0.0) && (_Formula>=0) && (_Formula<=4); in isValid()
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/dports/biology/hyphy/hyphy-2.5.33/tests/hbltests/UnitTests/HBLCommands/ |
H A D | FindRoot.bf | 10 return {{"_ElementaryCommand::HandleFindRootOrIntegrate","_Formula::Newton","_Formula::Brent"}};
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H A D | Integrate.bf | 10 return {{"_ElementaryCommand::HandleFindRootOrIntegrate","_Formula::Newton","_Formula::Brent"}};
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/dports/graphics/nip2/nip2-8.7.1/src/ |
H A D | formula.h | 40 typedef struct _Formula { struct
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/dports/biology/hyphy/hyphy-2.5.33/src/new/ |
H A D | scfg.cpp | 284 probabilities.StoreFormula (index, 0, *(_Formula*)fl_ref); in Scfg() 410 _Formula *aFormula ; in ProcessAFormula() 412 aFormula = new _Formula; in ProcessAFormula() 417 _Formula lhs; in ProcessAFormula() 426 aFormula = new _Formula (new HY_CONSTANT_TRUE, false); // constant 1.0 in ProcessAFormula() 1196 _Formula * thisRule = probabilities.GetFormula (ruleCount, 0); in Optimize() 1203 _Formula * thatRule = probabilities.GetFormula (nextrule, 0); in Optimize() 1466 _Formula * thisFormula = probabilities.GetFormula (ruleCount,0); in Optimize()
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