Searched refs:_snp_1 (Results 1 – 7 of 7) sorted by relevance
214 _snp_1.resize(_include.size()); in read_bedfile()217 _snp_1[i].reserve(_keep.size()); in read_bedfile()239 _snp_1[snp_indx][indi_indx] = (!b[k++]); in read_bedfile()831 b[pos++] = (!_snp_1[_include[i]][_keep[j]]); in save_bedfile()874 _snp_1.resize(_snp_num); in dose2bed()877 _snp_1[i].resize(_indi_num); in dose2bed()885 _snp_1[_include[i]][_keep[j]] = true; in dose2bed()889 _snp_1[_include[i]][_keep[j]] = false; in dose2bed()1581 if (!_snp_1[_include[j]][_keep[i]] || _snp_2[_include[j]][_keep[i]]) { in makex_eigenVector()1670 if (!_snp_1[k][_keep[i]] || _snp_2[k][_keep[i]]) { in make_XMat_subset()[all …]
57 _snp_1.resize(_snp_num); in read_IRG_fnames()60 _snp_1[i].reserve(_indi_num); in read_IRG_fnames()
49 if(!_snp_1[_include[k]][_keep[i]] || _snp_2[_include[k]][_keep[i]]){ in paa()50 x=_snp_1[_include[k]][_keep[i]]+_snp_2[_include[k]][_keep[i]]; in paa()145 if(!_snp_1[_include[k]][_keep[i]] || _snp_2[_include[k]][_keep[i]]){ in ibc()146 x=_snp_1[_include[k]][_keep[i]]+_snp_2[_include[k]][_keep[i]]; in ibc()
35 if (!_snp_1[_include[j]][_keep[i]] || _snp_2[_include[j]][_keep[i]]) { in make_XMat_mkl()36 …if (_allele1[_include[j]] == _ref_A[_include[j]]) X[i * m + j] = _snp_1[_include[j]][_keep[i]] + _… in make_XMat_mkl()37 … else X[i * m + j] = 2.0 - (_snp_1[_include[j]][_keep[i]] + _snp_2[_include[j]][_keep[i]]); in make_XMat_mkl()61 if (!_snp_1[_include[j]][_keep[i]] || _snp_2[_include[j]][_keep[i]]) { in make_XMat_mkl()63 …if (_allele1[_include[j]] == _ref_A[_include[j]]) X[k] = _snp_1[_include[j]][_keep[i]] + _snp_2[_i… in make_XMat_mkl()64 … else X[k] = 2.0 - (_snp_1[_include[j]][_keep[i]] + _snp_2[_include[j]][_keep[i]]); in make_XMat_mkl()
208 …if (_snp_1[_include[j]][_keep[i]] && !_snp_2[_include[j]][_keep[i]]) out_emBayesB << _mu[_include[… in GWAS_simu()209 …else out_emBayesB << (double) (_snp_1[_include[j]][_keep[i]] + _snp_2[_include[j]][_keep[i]]) << "… in GWAS_simu()
405 if (!_snp_1[_include[j]][_keep[i]] || _snp_2[_include[j]][_keep[i]]) {406 …if (_allele1[_include[j]] == _ref_A[_include[j]]) x[i] = (_snp_1[_include[j]][_keep[i]] + _snp_2[_…407 else x[i] = 2.0 - (_snp_1[_include[j]][_keep[i]] + _snp_2[_include[j]][_keep[i]]);444 vector< vector<bool> > _snp_1; variable
1424 if (!_snp_1[_include[k]][_keep[i]] || _snp_2[_include[k]][_keep[i]]) { in blup_snp_geno()1425 …if (_allele1[_include[k]] == _ref_A[_include[k]]) x = _snp_1[_include[k]][_keep[i]] + _snp_2[_incl… in blup_snp_geno()1426 else x = 2.0 - (_snp_1[_include[k]][_keep[i]] + _snp_2[_include[k]][_keep[i]]); in blup_snp_geno()