Searched refs:_snp_name_map (Results 1 – 11 of 11) sorted by relevance
/dports/biology/gcta/gcta_1.26.0_src/ |
H A D | data.cpp | 183 _snp_name_map.clear(); in init_include() 187 if(_snp_name_map.find(_snp_name[i]) != _snp_name_map.end()){ in init_include() 260 if (_snp_name_map.find(_snp_name[i]) != _snp_name_map.end()) rsnp[i] = 1; in get_rsnp() 315 _snp_name_map.clear(); in update_bim() 1043 _snp_name_map.clear(); in extract_chr() 1066 _snp_name_map.clear(); in filter_snp_maf() 1070 _snp_name_map.insert(*iter); in filter_snp_maf() 1090 _snp_name_map.clear(); in filter_snp_max_maf() 1094 _snp_name_map.insert(*iter); in filter_snp_max_maf() 1112 _snp_name_map.clear(); in filter_impRsq() [all …]
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H A D | gwas_simu.cpp | 27 map<string, int>::iterator iter, End = _snp_name_map.end(); in read_QTL_file() 34 iter = _snp_name_map.find(qtl_buf); in read_QTL_file() 106 update_id_map_kp(qtl_name, _snp_name_map, _include); in GWAS_simu() 199 if (!output_causal) update_id_map_rm(qtl_name, _snp_name_map, _include); in GWAS_simu()
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H A D | UnusedCode.cpp | 151 if(_snp_name_map.find(str_buf)!=_snp_name_map.end()) comm_SNPs.push_back(str_buf); in grm_between() 156 update_id_map_kp(comm_SNPs, _snp_name_map, _include); in grm_between() 157 plk->update_id_map_kp(comm_SNPs, plk->_snp_name_map, plk->_include); in grm_between()
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H A D | sbat.cpp | 27 iter = _snp_name_map.find(vs_buf[0]); in sbat_read_snpAssoc() 28 if (iter == _snp_name_map.end()) continue; in sbat_read_snpAssoc() 39 update_id_map_kp(snp_name, _snp_name_map, _include); in sbat_read_snpAssoc() 258 if (_snp_name_map.find(vs_buf[i]) != _snp_name_map.end()){ in sbat_read_snpset() 270 update_id_map_kp(snp_name, _snp_name_map, _include); in sbat_read_snpset()
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H A D | gbat.cpp | 26 iter = _snp_name_map.find(vs_buf[0]); in gbat_read_snpAssoc() 27 if (iter == _snp_name_map.end()) continue; in gbat_read_snpAssoc() 34 update_id_map_kp(snp_name, _snp_name_map, _include); in gbat_read_snpAssoc()
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H A D | mlm_assoc.cpp | 382 map<string, int> snp_name_map_o(_snp_name_map); in mlma_loco() 398 _snp_name_map=snp_name_map_o; in mlma_loco() 483 _snp_name_map=snp_name_map_o; in mlma_loco()
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H A D | popu_genet.cpp | 26 map<string, int>::iterator iter, End=_snp_name_map.end(); in paa() 33 iter=_snp_name_map.find(str_buf); in paa()
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H A D | joint_meta.cpp | 43 iter = _snp_name_map.find(snp_buf); in read_metafile() 54 if (iter == _snp_name_map.end()) continue; in read_metafile() 87 update_id_map_kp(snplist, _snp_name_map, _include); in read_metafile()
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H A D | ld.cpp | 31 if (iter != snp_map_buf.end()) _snp_name_map.insert(*iter); in read_LD_target_SNPs() 35 …for (iter = _snp_name_map.begin(); iter != _snp_name_map.end(); iter++) _include.push_back(iter->s… in read_LD_target_SNPs()
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H A D | gcta.h | 419 map<string, int> _snp_name_map; variable
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H A D | mkl.cpp | 514 update_id_map_rm(rm_snp_name, _snp_name_map, _include); in LD_pruning_mkl()
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