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Searched refs:_snp_name_map (Results 1 – 11 of 11) sorted by relevance

/dports/biology/gcta/gcta_1.26.0_src/
H A Ddata.cpp183 _snp_name_map.clear(); in init_include()
187 if(_snp_name_map.find(_snp_name[i]) != _snp_name_map.end()){ in init_include()
260 if (_snp_name_map.find(_snp_name[i]) != _snp_name_map.end()) rsnp[i] = 1; in get_rsnp()
315 _snp_name_map.clear(); in update_bim()
1043 _snp_name_map.clear(); in extract_chr()
1066 _snp_name_map.clear(); in filter_snp_maf()
1070 _snp_name_map.insert(*iter); in filter_snp_maf()
1090 _snp_name_map.clear(); in filter_snp_max_maf()
1094 _snp_name_map.insert(*iter); in filter_snp_max_maf()
1112 _snp_name_map.clear(); in filter_impRsq()
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H A Dgwas_simu.cpp27 map<string, int>::iterator iter, End = _snp_name_map.end(); in read_QTL_file()
34 iter = _snp_name_map.find(qtl_buf); in read_QTL_file()
106 update_id_map_kp(qtl_name, _snp_name_map, _include); in GWAS_simu()
199 if (!output_causal) update_id_map_rm(qtl_name, _snp_name_map, _include); in GWAS_simu()
H A DUnusedCode.cpp151 if(_snp_name_map.find(str_buf)!=_snp_name_map.end()) comm_SNPs.push_back(str_buf); in grm_between()
156 update_id_map_kp(comm_SNPs, _snp_name_map, _include); in grm_between()
157 plk->update_id_map_kp(comm_SNPs, plk->_snp_name_map, plk->_include); in grm_between()
H A Dsbat.cpp27 iter = _snp_name_map.find(vs_buf[0]); in sbat_read_snpAssoc()
28 if (iter == _snp_name_map.end()) continue; in sbat_read_snpAssoc()
39 update_id_map_kp(snp_name, _snp_name_map, _include); in sbat_read_snpAssoc()
258 if (_snp_name_map.find(vs_buf[i]) != _snp_name_map.end()){ in sbat_read_snpset()
270 update_id_map_kp(snp_name, _snp_name_map, _include); in sbat_read_snpset()
H A Dgbat.cpp26 iter = _snp_name_map.find(vs_buf[0]); in gbat_read_snpAssoc()
27 if (iter == _snp_name_map.end()) continue; in gbat_read_snpAssoc()
34 update_id_map_kp(snp_name, _snp_name_map, _include); in gbat_read_snpAssoc()
H A Dmlm_assoc.cpp382 map<string, int> snp_name_map_o(_snp_name_map); in mlma_loco()
398 _snp_name_map=snp_name_map_o; in mlma_loco()
483 _snp_name_map=snp_name_map_o; in mlma_loco()
H A Dpopu_genet.cpp26 map<string, int>::iterator iter, End=_snp_name_map.end(); in paa()
33 iter=_snp_name_map.find(str_buf); in paa()
H A Djoint_meta.cpp43 iter = _snp_name_map.find(snp_buf); in read_metafile()
54 if (iter == _snp_name_map.end()) continue; in read_metafile()
87 update_id_map_kp(snplist, _snp_name_map, _include); in read_metafile()
H A Dld.cpp31 if (iter != snp_map_buf.end()) _snp_name_map.insert(*iter); in read_LD_target_SNPs()
35 …for (iter = _snp_name_map.begin(); iter != _snp_name_map.end(); iter++) _include.push_back(iter->s… in read_LD_target_SNPs()
H A Dgcta.h419 map<string, int> _snp_name_map; variable
H A Dmkl.cpp514 update_id_map_rm(rm_snp_name, _snp_name_map, _include); in LD_pruning_mkl()