/dports/biology/star/STAR-2.7.9a/source/ |
H A D | Transcriptome_quantAlign.cpp | 8 uint32 g1=aG.exons[0][EX_G]-trS1;//start of the align in alignToTranscript() 25 aG.canonSJ[aG.nExons-1]=-999; //marks the last exons in alignToTranscript() 27 … if (aG.exons[iab][EX_G]+aG.exons[iab][EX_L]>exSE1[2*ex1+1]+trS1+1) {//block extends past exon end in alignToTranscript() 30 if (iab==0 || aG.canonSJ[iab-1]<0) { in alignToTranscript() 31 aT.exons[aT.nExons][EX_R]=aG.exons[iab][EX_R]; in alignToTranscript() 33 aT.exons[aT.nExons][EX_L]=aG.exons[iab][EX_L]; in alignToTranscript() 38 aT.exons[aT.nExons-1][EX_L]+=aG.exons[iab][EX_L]; in alignToTranscript() 40 switch (aG.canonSJ[iab]) { in alignToTranscript() 80 …if ( aG.exons[iab][EX_G]+aG.exons[iab][EX_L]==exSE1[2*ex1+1]+trS1+1 && aG.exons[iab+1][EX_G]==exSE… in alignToTranscript() 98 uint aGend=aG.exons[aG.nExons-1][EX_G]; in quantAlign() [all …]
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H A D | Transcriptome_classifyAlign.cpp | 32 bS=(uint32) (aG.exons[iab][EX_G]-trS1);//block start in alignToTranscript() 33 bE=bS+aG.exons[iab][EX_L]-1;//block end in alignToTranscript() 35 if (iab==0 || aG.canonSJ[iab-1]==-3) {//start of alig, or jump to another mate in alignToTranscript() 39 } else if (aG.canonSJ[iab-1]>=0) {//splice junction in alignToTranscript() 105 uint32 bS=(uint32) (aG.exons[iab][EX_G]-trS1);//block start in alignToTranscriptMinOverlap() 115 …while (iab < aG.nExons-1 && aG.canonSJ[iab] > -3 && aG.canonSJ[iab] < 0) {//indel, expand the … in alignToTranscriptMinOverlap() 119 uint32 bE=(uint32) (aG.exons[iab][EX_G] - trS1 + aG.exons[iab][EX_L] - 1);//block end in alignToTranscriptMinOverlap() 189 Transcript &aG=*alignG[iag]; in classifyAlign() local 196 …uint64 aGend=aG.exons[aG.nExons-1][EX_G]+aG.exons[aG.nExons-1][EX_L]-1; //TODO: this estimate does… in classifyAlign() 202 …(P.pSolo.strand >= 0 && (trStr[tr1]==1 ? aG.Str : 1-aG.Str) != (uint32)P.pSolo.strand) ) //!(this … in classifyAlign() [all …]
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H A D | signalFromBAM.cpp | 151 uint32_t aG=bamA->core.pos; in signalFromBAM() local 160 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM() 162 … sigAll[aG*sigN+1+2*iStrand]+=1.0/aNH;//U+M, normalized by the number of multi-mapping loci in signalFromBAM() 175 aG+=cigL; in signalFromBAM() 180 if (aG>=chrLen) { in signalFromBAM() 185 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM() 188 aG++; in signalFromBAM() 191 aG+=cigL; in signalFromBAM() 196 --aG; in signalFromBAM() 198 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM() [all …]
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/dports/cad/opencascade/opencascade-7.6.0/src/BinMDataXtd/ |
H A D | BinMDataXtd_ConstraintDriver.cxx | 89 Handle(TNaming_NamedShape) aG; in Paste() local 91 aG = Handle(TNaming_NamedShape)::DownCast(theRelocTable.Find(aNb)); in Paste() 94 aG = new TNaming_NamedShape; in Paste() 95 theRelocTable.Bind(aNb, aG); in Paste() 97 aC->SetGeometry (iG++, aG); in Paste() 162 Handle(TNaming_NamedShape) aG = aC->GetGeometry(iG); in Paste() 163 if (!aG.IsNull()) in Paste() 164 aNb = theRelocTable.Add(aG); in Paste()
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/dports/cad/graywolf/graywolf-0.1.6-4-gf47937b/src/twsc/ |
H A D | ucxx1.c | 71 acellptr = carrayG[ aG ] ; 115 newtimepenal += calc_incr_time( aG ) ; 129 update_time( aG ) ; 132 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ; 134 G( erase_a_cell( aG, acellptr->cxcenter, acellptr->cycenter ) ) ; 150 G( graphics_cell_update( aG ) ) ; 153 G( graphics_cell_attempt( aG ) ) ;
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H A D | ucxxo1.c | 75 acellptr = carrayG[ aG ] ; 120 newtimepenal += calc_incr_time( aG ) ; 135 update_time( aG ) ; 138 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ; 140 G( erase_a_cell( aG, axcenter, acellptr->cycenter ) ) ; 157 G( graphics_cell_update( aG ) ) ; 160 G( graphics_cell_attempt( aG ) ) ;
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H A D | ucxxo2.c | 78 acellptr = carrayG[ aG ] ; 143 newtimepenal += calc_incr_time2( aG, bG ) ; 170 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ; 186 G( erase_a_cell( aG, axcenter, aycenter ) ) ; 209 G( graphics_cell_update( aG ) ) ; 213 G( graphics_cell_attempt( aG ) ) ;
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H A D | ucxx2.c | 88 acellptr = carrayG[ aG ] ; in ucxx2() 162 newtimepenal += calc_incr_time2( aG, bG ) ; in ucxx2() 190 add_cell( &binptrG[bblockG][anbin]->cell , aG ) ; in ucxx2() 201 add_cell( &binptrG[ablockG][anbin]->cell , aG ) ; in ucxx2() 211 G( erase_a_cell( aG, axcenterG, aycenterG ) ) ; in ucxx2() 231 G( graphics_cell_update( aG ) ) ; in ucxx2() 235 G( graphics_cell_attempt( aG ) ) ; in ucxx2()
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/dports/science/jdftx/jdftx-1.6.0/jdftx/core/ |
H A D | RadialFunction.h | 85 { double aG = a*G; in cusplessExpTilde() local 86 double den = 1./(1.+aG*aG); in cusplessExpTilde() 93 double aG = a*G; in exponentialTilde() local 94 double den = 1./(1.+aG*aG); in exponentialTilde()
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/dports/math/gap/gap-4.11.0/pkg/loops-3.4.1/data/rcc/ |
H A D | sections16.109.tbl | 1 …?I@ 2/ PT %a AE 1P 4W 1P 2M a U`2 G B7 G 4S 4% 26 4% Oq 4%aG 9_ 4%aG 4S 4%aG 1j 4%aG 8HT G …
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/dports/cad/opencascade/opencascade-7.6.0/src/XmlMDataXtd/ |
H A D | XmlMDataXtd_ConstraintDriver.cxx | 147 Handle(TNaming_NamedShape) aG; in Paste() local 149 aG = Handle(TNaming_NamedShape)::DownCast(theRelocTable.Find(aNb)); in Paste() 152 aG = new TNaming_NamedShape; in Paste() 153 theRelocTable.Bind(aNb, aG); in Paste() 155 aC->SetGeometry (i, aG); in Paste() 239 Handle(TNaming_NamedShape) aG = aC->GetGeometry(i); in Paste() 241 if (!aG.IsNull()) in Paste() 243 aNb = theRelocTable.FindIndex(aG); in Paste() 246 aNb = theRelocTable.Add(aG); in Paste()
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/dports/cad/opencascade/opencascade-7.6.0/src/BRepBndLib/ |
H A D | BRepBndLib_1.cxx | 351 GProp_GProps aG; in ComputeProperties() local 352 BRepGProp::VolumeProperties(anExp.Current(), aG, Standard_True); in ComputeProperties() 353 theGCommon.Add(aG); in ComputeProperties() 358 GProp_GProps aG; in ComputeProperties() local 359 BRepGProp::SurfaceProperties(anExp.Current(), aG, Standard_True); in ComputeProperties() 360 theGCommon.Add(aG); in ComputeProperties() 365 GProp_GProps aG; in ComputeProperties() local 366 BRepGProp::LinearProperties(anExp.Current(), aG, Standard_True); in ComputeProperties() 367 theGCommon.Add(aG); in ComputeProperties() 372 GProp_GProps aG(BRep_Tool::Pnt(TopoDS::Vertex(anExp.Current()))); in ComputeProperties() local [all …]
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/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}} 66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
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/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}} 66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
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/dports/graphics/llvm-mesa/llvm-13.0.1.src/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}} 66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
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/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}} 66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
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/dports/devel/llvm13/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}} 65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}} 66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
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/dports/lang/spidermonkey78/firefox-78.9.0/gfx/2d/ |
H A D | Types.h | 447 sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor() 448 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor() 449 sRGBColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor() 459 static sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8() 460 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8() 509 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor() 510 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor() 511 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor() 528 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8() 529 return DeviceColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8()
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/dports/games/colobot/colobot-colobot-gold-0.2.0-alpha/src/graphics/core/ |
H A D | color.h | 45 explicit Color(float aR = 0.0f, float aG = 0.0f, float aB = 0.0f, float aA = 0.0f) 46 : r(aR), g(aG), b(aB), a(aA) {} in r() 107 …explicit IntColor(unsigned char aR = 0, unsigned char aG = 0, unsigned char aB = 0, unsigned char … 108 : r(aR), g(aG), b(aB), a(aA) {} in r()
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/dports/www/firefox-esr/firefox-91.8.0/gfx/2d/ |
H A D | Types.h | 530 constexpr sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor() 531 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor() 532 constexpr sRGBColor(Float aR, Float aG, Float aB) in sRGBColor() 533 : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor() 547 static constexpr sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, in FromU8() 549 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8() 621 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor() 622 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor() 623 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor() 640 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8() [all …]
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/dports/mail/thunderbird/thunderbird-91.8.0/gfx/2d/ |
H A D | Types.h | 530 constexpr sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor() 531 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor() 532 constexpr sRGBColor(Float aR, Float aG, Float aB) in sRGBColor() 533 : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor() 547 static constexpr sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, in FromU8() 549 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8() 621 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor() 622 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor() 623 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor() 640 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8() [all …]
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 20 ; SEP-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat,unique,2 22 ; SEP_NOUNIQUE_GAS-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
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/dports/audio/lsp-plugins-lv2/lsp-plugins-1.1.31/src/ui/tk/sys/ |
H A D | LSPColor.cpp | 33 aG = -1; in Listener() 61 LISTENER_UNBIND(aG); in unbind() 89 LISTENER_RESET(aG); in reset() 139 LISTENER_BIND(aG, PT_FLOAT, ".green"); in bind() 180 if (aG >= 0) in sync() 181 style->set_float(aG, c.green()); in sync() 236 if ((property == aG) && (style->get_float(aG, &v) == STATUS_OK)) in notify()
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/dports/cad/opencascade/opencascade-7.6.0/src/Quantity/ |
H A D | Quantity_Color.cxx | 327 Standard_Real aG = 0.5 * (1. - Sqrt (aC_mean_pow7 / (aC_mean_pow7 + a25_pow7))); in DeltaE2000() local 328 Standard_Real aa1x = aa1 * (1. + aG); in DeltaE2000() 329 Standard_Real aa2x = aa2 * (1. + aG); in DeltaE2000() 569 double aG = theRgb[1]; in Convert_LinearRGB_To_Lab() local 574 double aX = (aR * 0.4124564 + aG * 0.3575761 + aB * 0.1804375) * 100. / 95.047; in Convert_LinearRGB_To_Lab() 575 double aY = (aR * 0.2126729 + aG * 0.7151522 + aB * 0.0721750) * 100. / 100.000; in Convert_LinearRGB_To_Lab() 576 double aZ = (aR * 0.0193339 + aG * 0.1191920 + aB * 0.9503041) * 100. / 108.883; in Convert_LinearRGB_To_Lab() 623 double aG = (aX * -0.9692660 + aY * 1.8760108 + aZ * 0.0415560) / 100.; in Convert_Lab_To_LinearRGB() local 628 (aR >= 0. && aR <= 1. && aG >= 0. && aG <= 1. && aB >= 0. && aB <= 1.)) in Convert_Lab_To_LinearRGB() 630 return NCollection_Vec3<float>((float)aR, (float)aG, (float)aB); in Convert_Lab_To_LinearRGB()
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/dports/devel/llvm12/llvm-project-12.0.1.src/llvm/test/CodeGen/X86/ |
H A D | gcc_except_table-multi.ll | 18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 19 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}} 20 ; SEP-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}} 21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat,unique,2 22 ; SEP_NOUNIQUE_GAS-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
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