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/dports/biology/star/STAR-2.7.9a/source/
H A DTranscriptome_quantAlign.cpp8 uint32 g1=aG.exons[0][EX_G]-trS1;//start of the align in alignToTranscript()
25 aG.canonSJ[aG.nExons-1]=-999; //marks the last exons in alignToTranscript()
27 … if (aG.exons[iab][EX_G]+aG.exons[iab][EX_L]>exSE1[2*ex1+1]+trS1+1) {//block extends past exon end in alignToTranscript()
30 if (iab==0 || aG.canonSJ[iab-1]<0) { in alignToTranscript()
31 aT.exons[aT.nExons][EX_R]=aG.exons[iab][EX_R]; in alignToTranscript()
33 aT.exons[aT.nExons][EX_L]=aG.exons[iab][EX_L]; in alignToTranscript()
38 aT.exons[aT.nExons-1][EX_L]+=aG.exons[iab][EX_L]; in alignToTranscript()
40 switch (aG.canonSJ[iab]) { in alignToTranscript()
80 …if ( aG.exons[iab][EX_G]+aG.exons[iab][EX_L]==exSE1[2*ex1+1]+trS1+1 && aG.exons[iab+1][EX_G]==exSE… in alignToTranscript()
98 uint aGend=aG.exons[aG.nExons-1][EX_G]; in quantAlign()
[all …]
H A DTranscriptome_classifyAlign.cpp32 bS=(uint32) (aG.exons[iab][EX_G]-trS1);//block start in alignToTranscript()
33 bE=bS+aG.exons[iab][EX_L]-1;//block end in alignToTranscript()
35 if (iab==0 || aG.canonSJ[iab-1]==-3) {//start of alig, or jump to another mate in alignToTranscript()
39 } else if (aG.canonSJ[iab-1]>=0) {//splice junction in alignToTranscript()
105 uint32 bS=(uint32) (aG.exons[iab][EX_G]-trS1);//block start in alignToTranscriptMinOverlap()
115 …while (iab < aG.nExons-1 && aG.canonSJ[iab] > -3 && aG.canonSJ[iab] < 0) {//indel, expand the … in alignToTranscriptMinOverlap()
119 uint32 bE=(uint32) (aG.exons[iab][EX_G] - trS1 + aG.exons[iab][EX_L] - 1);//block end in alignToTranscriptMinOverlap()
189 Transcript &aG=*alignG[iag]; in classifyAlign() local
196 …uint64 aGend=aG.exons[aG.nExons-1][EX_G]+aG.exons[aG.nExons-1][EX_L]-1; //TODO: this estimate does… in classifyAlign()
202 …(P.pSolo.strand >= 0 && (trStr[tr1]==1 ? aG.Str : 1-aG.Str) != (uint32)P.pSolo.strand) ) //!(this … in classifyAlign()
[all …]
H A DsignalFromBAM.cpp151 uint32_t aG=bamA->core.pos; in signalFromBAM() local
160 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM()
162 … sigAll[aG*sigN+1+2*iStrand]+=1.0/aNH;//U+M, normalized by the number of multi-mapping loci in signalFromBAM()
175 aG+=cigL; in signalFromBAM()
180 if (aG>=chrLen) { in signalFromBAM()
185 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM()
188 aG++; in signalFromBAM()
191 aG+=cigL; in signalFromBAM()
196 --aG; in signalFromBAM()
198 sigAll[aG*sigN+0+2*iStrand]++; in signalFromBAM()
[all …]
/dports/cad/opencascade/opencascade-7.6.0/src/BinMDataXtd/
H A DBinMDataXtd_ConstraintDriver.cxx89 Handle(TNaming_NamedShape) aG; in Paste() local
91 aG = Handle(TNaming_NamedShape)::DownCast(theRelocTable.Find(aNb)); in Paste()
94 aG = new TNaming_NamedShape; in Paste()
95 theRelocTable.Bind(aNb, aG); in Paste()
97 aC->SetGeometry (iG++, aG); in Paste()
162 Handle(TNaming_NamedShape) aG = aC->GetGeometry(iG); in Paste()
163 if (!aG.IsNull()) in Paste()
164 aNb = theRelocTable.Add(aG); in Paste()
/dports/cad/graywolf/graywolf-0.1.6-4-gf47937b/src/twsc/
H A Ducxx1.c71 acellptr = carrayG[ aG ] ;
115 newtimepenal += calc_incr_time( aG ) ;
129 update_time( aG ) ;
132 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ;
134 G( erase_a_cell( aG, acellptr->cxcenter, acellptr->cycenter ) ) ;
150 G( graphics_cell_update( aG ) ) ;
153 G( graphics_cell_attempt( aG ) ) ;
H A Ducxxo1.c75 acellptr = carrayG[ aG ] ;
120 newtimepenal += calc_incr_time( aG ) ;
135 update_time( aG ) ;
138 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ;
140 G( erase_a_cell( aG, axcenter, acellptr->cycenter ) ) ;
157 G( graphics_cell_update( aG ) ) ;
160 G( graphics_cell_attempt( aG ) ) ;
H A Ducxxo2.c78 acellptr = carrayG[ aG ] ;
143 newtimepenal += calc_incr_time2( aG, bG ) ;
170 add_cell( &binptrG[bblockG][ SetBin(bxcenter) ]->cell , aG ) ;
186 G( erase_a_cell( aG, axcenter, aycenter ) ) ;
209 G( graphics_cell_update( aG ) ) ;
213 G( graphics_cell_attempt( aG ) ) ;
H A Ducxx2.c88 acellptr = carrayG[ aG ] ; in ucxx2()
162 newtimepenal += calc_incr_time2( aG, bG ) ; in ucxx2()
190 add_cell( &binptrG[bblockG][anbin]->cell , aG ) ; in ucxx2()
201 add_cell( &binptrG[ablockG][anbin]->cell , aG ) ; in ucxx2()
211 G( erase_a_cell( aG, axcenterG, aycenterG ) ) ; in ucxx2()
231 G( graphics_cell_update( aG ) ) ; in ucxx2()
235 G( graphics_cell_attempt( aG ) ) ; in ucxx2()
/dports/science/jdftx/jdftx-1.6.0/jdftx/core/
H A DRadialFunction.h85 { double aG = a*G; in cusplessExpTilde() local
86 double den = 1./(1.+aG*aG); in cusplessExpTilde()
93 double aG = a*G; in exponentialTilde() local
94 double den = 1./(1.+aG*aG); in exponentialTilde()
/dports/math/gap/gap-4.11.0/pkg/loops-3.4.1/data/rcc/
H A Dsections16.109.tbl1 …?I@ 2/ PT %a AE 1P 4W 1P 2M a U`2 G B7 G 4S 4% 26 4% Oq 4%aG 9_ 4%aG 4S 4%aG 1j 4%aG 8HT G …
/dports/cad/opencascade/opencascade-7.6.0/src/XmlMDataXtd/
H A DXmlMDataXtd_ConstraintDriver.cxx147 Handle(TNaming_NamedShape) aG; in Paste() local
149 aG = Handle(TNaming_NamedShape)::DownCast(theRelocTable.Find(aNb)); in Paste()
152 aG = new TNaming_NamedShape; in Paste()
153 theRelocTable.Bind(aNb, aG); in Paste()
155 aC->SetGeometry (i, aG); in Paste()
239 Handle(TNaming_NamedShape) aG = aC->GetGeometry(i); in Paste()
241 if (!aG.IsNull()) in Paste()
243 aNb = theRelocTable.FindIndex(aG); in Paste()
246 aNb = theRelocTable.Add(aG); in Paste()
/dports/cad/opencascade/opencascade-7.6.0/src/BRepBndLib/
H A DBRepBndLib_1.cxx351 GProp_GProps aG; in ComputeProperties() local
352 BRepGProp::VolumeProperties(anExp.Current(), aG, Standard_True); in ComputeProperties()
353 theGCommon.Add(aG); in ComputeProperties()
358 GProp_GProps aG; in ComputeProperties() local
359 BRepGProp::SurfaceProperties(anExp.Current(), aG, Standard_True); in ComputeProperties()
360 theGCommon.Add(aG); in ComputeProperties()
365 GProp_GProps aG; in ComputeProperties() local
366 BRepGProp::LinearProperties(anExp.Current(), aG, Standard_True); in ComputeProperties()
367 theGCommon.Add(aG); in ComputeProperties()
372 GProp_GProps aG(BRep_Tool::Pnt(TopoDS::Vertex(anExp.Current()))); in ComputeProperties() local
[all …]
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
/dports/graphics/llvm-mesa/llvm-13.0.1.src/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
/dports/devel/llvm13/llvm-project-13.0.1.src/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; SEP_BFD-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
22 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
62 ; NORMAL-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
63 ; SEP_BFD-NEXT: .section .gcc_except_table.zero,"aG",@progbits,zero{{$}}
65 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
66 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,zero{{$}}
/dports/lang/spidermonkey78/firefox-78.9.0/gfx/2d/
H A DTypes.h447 sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor()
448 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor()
449 sRGBColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor()
459 static sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8()
460 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8()
509 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor()
510 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor()
511 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor()
528 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8()
529 return DeviceColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8()
/dports/games/colobot/colobot-colobot-gold-0.2.0-alpha/src/graphics/core/
H A Dcolor.h45 explicit Color(float aR = 0.0f, float aG = 0.0f, float aB = 0.0f, float aA = 0.0f)
46 : r(aR), g(aG), b(aB), a(aA) {} in r()
107 …explicit IntColor(unsigned char aR = 0, unsigned char aG = 0, unsigned char aB = 0, unsigned char …
108 : r(aR), g(aG), b(aB), a(aA) {} in r()
/dports/www/firefox-esr/firefox-91.8.0/gfx/2d/
H A DTypes.h530 constexpr sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor()
531 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor()
532 constexpr sRGBColor(Float aR, Float aG, Float aB) in sRGBColor()
533 : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor()
547 static constexpr sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, in FromU8()
549 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8()
621 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor()
622 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor()
623 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor()
640 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8()
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/gfx/2d/
H A DTypes.h530 constexpr sRGBColor(Float aR, Float aG, Float aB, Float aA) in sRGBColor()
531 : r(aR), g(aG), b(aB), a(aA) {} in sRGBColor()
532 constexpr sRGBColor(Float aR, Float aG, Float aB) in sRGBColor()
533 : r(aR), g(aG), b(aB), a(1.0f) {} in sRGBColor()
547 static constexpr sRGBColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, in FromU8()
549 return sRGBColor(float(aR) / 255.f, float(aG) / 255.f, float(aB) / 255.f, in FromU8()
621 DeviceColor(Float aR, Float aG, Float aB, Float aA) in DeviceColor()
622 : r(aR), g(aG), b(aB), a(aA) {} in DeviceColor()
623 DeviceColor(Float aR, Float aG, Float aB) : r(aR), g(aG), b(aB), a(1.0f) {} in DeviceColor()
640 static DeviceColor FromU8(uint8_t aR, uint8_t aG, uint8_t aB, uint8_t aA) { in FromU8()
[all …]
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
20 ; SEP-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat,unique,2
22 ; SEP_NOUNIQUE_GAS-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
/dports/audio/lsp-plugins-lv2/lsp-plugins-1.1.31/src/ui/tk/sys/
H A DLSPColor.cpp33 aG = -1; in Listener()
61 LISTENER_UNBIND(aG); in unbind()
89 LISTENER_RESET(aG); in reset()
139 LISTENER_BIND(aG, PT_FLOAT, ".green"); in bind()
180 if (aG >= 0) in sync()
181 style->set_float(aG, c.green()); in sync()
236 if ((property == aG) && (style->get_float(aG, &v) == STATUS_OK)) in notify()
/dports/cad/opencascade/opencascade-7.6.0/src/Quantity/
H A DQuantity_Color.cxx327 Standard_Real aG = 0.5 * (1. - Sqrt (aC_mean_pow7 / (aC_mean_pow7 + a25_pow7))); in DeltaE2000() local
328 Standard_Real aa1x = aa1 * (1. + aG); in DeltaE2000()
329 Standard_Real aa2x = aa2 * (1. + aG); in DeltaE2000()
569 double aG = theRgb[1]; in Convert_LinearRGB_To_Lab() local
574 double aX = (aR * 0.4124564 + aG * 0.3575761 + aB * 0.1804375) * 100. / 95.047; in Convert_LinearRGB_To_Lab()
575 double aY = (aR * 0.2126729 + aG * 0.7151522 + aB * 0.0721750) * 100. / 100.000; in Convert_LinearRGB_To_Lab()
576 double aZ = (aR * 0.0193339 + aG * 0.1191920 + aB * 0.9503041) * 100. / 108.883; in Convert_LinearRGB_To_Lab()
623 double aG = (aX * -0.9692660 + aY * 1.8760108 + aZ * 0.0415560) / 100.; in Convert_Lab_To_LinearRGB() local
628 (aR >= 0. && aR <= 1. && aG >= 0. && aG <= 1. && aB >= 0. && aB <= 1.)) in Convert_Lab_To_LinearRGB()
630 return NCollection_Vec3<float>((float)aR, (float)aG, (float)aB); in Convert_Lab_To_LinearRGB()
/dports/devel/llvm12/llvm-project-12.0.1.src/llvm/test/CodeGen/X86/
H A Dgcc_except_table-multi.ll18 ; NORMAL-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
19 ; NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}
20 ; SEP-NEXT: .section .gcc_except_table.group,"aG",@progbits,group,comdat{{$}}
21 ; SEP_NOUNIQUE-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat,unique,2
22 ; SEP_NOUNIQUE_GAS-NEXT: .section .gcc_except_table,"aG",@progbits,group,comdat{{$}}

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