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Searched refs:aa0t (Results 1 – 5 of 5) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dcal_consf.c94 aancpy(seqc0,(char *)f_str->aa0t+a_res->min0-mins,mins,ppst); in calc_cons_a()
114 aancpy(seqc0+mins-a_res->min0,(char *)f_str->aa0t,a_res->min0,ppst); in calc_cons_a()
118 aancpy(seqc0,(char *)f_str->aa0t+a_res->min0-mins,mins,ppst); in calc_cons_a()
127 aancpy(seqc0,(char *)f_str->aa0t+a_res->min0-mins,mins,ppst); in calc_cons_a()
258 aancpy(seqc0+mins+lenc,(char *)f_str->aa0t+a_res->max0, in calc_cons_a()
412 if (ppst->pam2[0][f_str->aa0t[i0]][aa1p[i1]]>0) { in calc_code()
417 else if (ppst->pam2[0][f_str->aa0t[i0]][aa1p[i1]]==0) { in calc_code()
422 sp0 = ppst->sq[f_str->aa0t[i0]]; in calc_code()
553 if (ppst->pam2[0][f_str->aa0t[i0]][aa1p[i1]]>0) { in calc_id()
557 else if (ppst->pam2[0][f_str->aa0t[i0]][aa1p[i1]]==0) { in calc_id()
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H A Ddropff2.c156 if ((f_str->aa0t = (unsigned char *) calloc(n0+1, sizeof(char))) == NULL) { in init_work()
383 free(f_str->aa0t); in close_work()
825 aa0pt = &f_str->aa0t[f_str->aa0ix]; in ma_spam()
858 if ((ci=(int)(aa0pt-f_str->aa0t)) > n0) { in ma_spam()
864 aa0pt = &f_str->aa0t[f_str->aa0ix]; in ma_spam()
1155 unsigned char *aa0t; in do_walign() local
1183 if ((aa0t = (unsigned char *)calloc(n0+1,sizeof(unsigned char)))==NULL) { in do_walign()
1208 a_res->nres = sconn_a (aa0t,n0, ppst->param_u.fa.cgap, f_str,a_res); in do_walign()
1209 free(aa0t); in do_walign()
1305 *aa0p++ = f_str->aa0t[sx++]; /* copy residue into aa0 */ in sconn_a()
[all …]
H A Ddropfs2.c156 if ((f_str->aa0t = (unsigned char *) calloc(n0+1, sizeof(char))) == NULL) { in init_work()
560 free(f_str->aa0t); in close_work()
1360 unsigned char *aa0t; in do_walign() local
1408 if ((aa0t = (unsigned char *)calloc(n0+1,sizeof(unsigned char)))==NULL) { in do_walign()
1414 for (i=0; i<n0; i++) f_str->aa0t[i] = aa0t[i] = aa0[i]; in do_walign()
1415 f_str->aa0t[i] = aa0t[i] = '\0'; in do_walign()
1417 a_res->nres = sconn_a (aa0t,n0,aa1p,n10,f_str, a_res, ppst); in do_walign()
1419 free(aa0t); in do_walign()
1585 *aa0p++ = f_str->aa0t[sx++]; /* save sequence at index */
1617 for (i=0; i<n0; i++) f_str->aa0t[i] = aa0[i];
H A Dtatstats.h72 unsigned char *aa0t; /* temp location for peptides */ member
/dports/biology/fasta/fasta/
H A Dzxlgmata.c163 pmatch(aa0,n0,aa0t,n0t,aa1,n1,flag) in pmatch() argument
164 unsigned char *aa0, *aa0t, *aa1; in pmatch()
178 score = pro_dna(aa1,n1,aa0t,n0,pam2,-(gdelval-ggapval), -ggapval, -gshift,
190 nc=calcons(aa0t,n0,aa1,n1,res,nres,&lc);