| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | cal_consf.c | 60 const unsigned char *aa1p; in calc_cons_a() local
72 aa1p = aa1; in calc_cons_a()
75 aa1p = f_str->aa1x; in calc_cons_a()
199 *sp1 = ppst->sq[aa1p[i1++]]; in calc_cons_a()
331 const unsigned char *aa1p; in calc_code() local
363 aa1p = aa1; in calc_code()
366 aa1p = f_str->aa1x; in calc_code()
423 sp1 = ppst->sq[aa1p[i1]]; in calc_code()
518 const unsigned char *aa1p; in calc_id() local
527 aa1p = aa1; in calc_id()
[all …]
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| H A D | cal_cons.c | 141 const unsigned char *aa1p; in calc_cons_a() local
186 aa1p = aa1; in calc_cons_a()
189 aa1p = f_str->aa1x; in calc_cons_a()
331 *sp1 = sq[aa1p[i1]]; in calc_cons_a()
421 *sp1 = sq[aa1p[i1]]; in calc_cons_a()
806 aa1p = aa1; in calc_code()
808 aa1p = f_str->aa1x; in calc_code()
883 aa1c = aa1p[i1]; in calc_code()
1120 aa1p = aa1; in calc_id()
1123 aa1p = f_str->aa1x; in calc_id()
[all …]
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| H A D | cal_cons2.c | 154 aancpy(seqc1,(char *)aa1p+a_res->min1-mins,mins,ppst); in pre_fill_cons()
193 const unsigned char *aa1p, int nn1, in post_fill_cons() argument
323 const unsigned char *aa1p; in calc_cons_u() local
369 aa1p = aa1; in calc_cons_u()
372 aa1p = f_str->aa1x; in calc_cons_u()
548 itmp=aa0_pam2_p[aa1p[i1]]; in calc_cons_u()
551 *sp1_p = sq[aa1p[i1]]; in calc_cons_u()
572 if (sq[aa1p[i1]] != *sp1_p) { in calc_cons_u()
577 sq[aa1p[i1]], sim_sym[t_spa], ann_comment, in calc_cons_u()
687 *sp1_p = sq[aa1p[i1]]; in calc_cons_u()
[all …]
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| H A D | dropff2.c | 748 const unsigned char *aa1p; in m1_spam() local
773 aa1p = &aa1[lpos]; in m1_spam()
811 const unsigned char *aa1p; in ma_spam() local
821 aa1p = &aa1[lpos]; in ma_spam()
853 aa0p++; aa1p++; in ma_spam()
865 aa1p = &aa1[lp0]; in ma_spam()
913 aa1p = &aa1[lpos]; in m0_spam()
927 aa0p++; aa1p++; in m0_spam()
1156 const unsigned char *aa1p; in do_walign() local
1167 aa1p = f_str->aa1x; in do_walign()
[all …]
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| H A D | dropnnw2.c | 636 const unsigned char *aa1p; in nw_walign() local
660 aa1p = aa1; in nw_walign()
663 while (*aa1p) { in nw_walign()
681 h = p + pam2p[j][*aa1p]; in nw_walign()
699 aa1p++; /* aa1p goes down the path graph, row by row */ in nw_walign()
775 const unsigned char *aa1p; in FGLOBAL_ALIGN() local
800 aa1p = aa1; in FGLOBAL_ALIGN()
802 while (*aa1p) { in FGLOBAL_ALIGN()
810 pwaa = waa + (*aa1p++ * n0); in FGLOBAL_ALIGN()
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| H A D | wm_align.c | 44 const unsigned char *aa1p; in sw_walign() local
64 aa1p = aa1; in sw_walign()
66 while (*aa1p) { in sw_walign()
74 h = p + pam2p[j][*aa1p]; in sw_walign()
89 aa1p++; in sw_walign()
103 for (i=I,aa1p=aa1+I; i>=0; i--) { in sw_walign()
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| H A D | dropnsw.c | 297 const unsigned char *aa0p, *aa1p; in do_work() local
333 aa1p = aa1; in do_work()
334 while (*aa1p) { in do_work()
337 pwaa = waa + (*aa1p++ * n0); in do_work()
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| H A D | dropgsw2.c | 887 const unsigned char *aa1p; in FLOCAL_ALIGN() local
901 aa1p=aa1; in FLOCAL_ALIGN()
902 while (*aa1p) { /* relies on aa1[n1]==0 for EOS flag */ in FLOCAL_ALIGN()
905 pwaa = f_str->waa_s + (*aa1p++)*n0; in FLOCAL_ALIGN()
1103 prof_score(const unsigned char *aa1p, int n0, int *pwaa_s) in prof_score() argument
1107 while (*aa1p) { in prof_score()
1108 sum += pwaa_s[(*aa1p++)*n0]; in prof_score()
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| H A D | dropfs2.c | 1032 register const unsigned char *aa0p, *aa1p; in spam() local
1035 aa1p = &aa1[dmax->start]; in spam()
1041 tot += pam2[*aa0p++][*aa1p++]; in spam()
1084 aa1p = &aa1[lpos = maxv.start]; in spam()
1088 tot += pam2[*aa0p++][*aa1p++]; in spam()
1361 const unsigned char *aa1p; in do_walign() local
1375 aa1p = f_str->aa1x; in do_walign()
1378 aa1p = aa1; in do_walign()
1381 do_fasts(aa0, n0, aa1p, n10, ppst, f_str, &rst, &hoff, 1, f_str->maxsav_w); in do_walign()
1417 a_res->nres = sconn_a (aa0t,n0,aa1p,n10,f_str, a_res, ppst); in do_walign()
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| H A D | dropnfa.c | 927 register const unsigned char *aa0p, *aa1p; in spam() local
935 aa1p = &aa1[lpos= dmax->start]; /* get the start of lib seq */ in spam()
946 tot += pam2[*aa0p++][*aa1p++]; in spam()
977 aa1p = &aa1[lpos= dmax->stop]; in spam()
981 tot += pam2[*(++aa0p)][*(++aa1p)]; in spam()
995 aa1p = &aa1[lpos= dmax->start]; in spam()
999 tot += pam2[*(--aa0p)][*(--aa1p)]; in spam()
2157 const unsigned char *aa1p; in do_walign() local
2167 aa1p = f_str->aa1x; in do_walign()
2170 aa1p = aa1; in do_walign()
[all …]
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| H A D | compacc2.c | 3649 unsigned char *aa1p; in check_seq_range() local
3652 for (aa1p = aa1b, i=0; i < n1; i++, aa1p++) { in check_seq_range()
3653 if (*aa1p > nsq) { in check_seq_range()
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| H A D | compacc2e.c | 3657 unsigned char *aa1p; in check_seq_range() local
3660 for (aa1p = aa1b, i=0; i < n1; i++, aa1p++) { in check_seq_range()
3661 if (*aa1p > nsq) { in check_seq_range()
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| H A D | dropfx2.c | 1095 const unsigned char *aa0p, *aa1p; local
1097 aa1p = &aa1[lpos = dmax->start];
1103 tot += pam2[*aa0p++][*aa1p++];
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| H A D | dropfz3.c | 1199 const unsigned char *aa0p, *aa1p; local
1201 aa1p = &aa1[lpos = dmax->start];
1207 tot += pam2[*aa0p++][*aa1p++];
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| H A D | dropfx.c | 1093 const unsigned char *aa0p, *aa1p; local
1095 aa1p = &aa1[lpos = dmax->start];
1101 tot += pam2[*aa0p++][*aa1p++];
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| H A D | dropfz2.c | 1199 const unsigned char *aa0p, *aa1p; local
1201 aa1p = &aa1[lpos = dmax->start];
1207 tot += pam2[*aa0p++][*aa1p++];
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| /dports/math/mpfi/mpfi-1.5.4/tests/ |
| H A D | sqrt.dat | 30 53 0xa.aa1p-4 0x1.0c348f804c7a9p+0
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| /dports/biology/fasta/fasta/ |
| H A D | prdf.c | 857 register char *aa0p, *aa1p; variable
859 aa1p= &aa1[lpos = dmax->start];
865 tot += pam2[*aa0p++][*aa1p++];
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| H A D | fffasta.c | 1955 register unsigned char *aa0p, *aa1p; variable
1957 aa1p= &aa1[lpos = dmax->start];
1967 tot += pam2[*aa0p++][*aa1p++];
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| /dports/www/firefox-esr/firefox-91.8.0/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
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| /dports/lang/spidermonkey78/firefox-78.9.0/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
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| /dports/www/firefox/firefox-99.0/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
|
| /dports/mail/thunderbird/thunderbird-91.8.0/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
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| /dports/www/firefox-legacy/firefox-52.8.0esr/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
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| /dports/lang/spidermonkey60/firefox-60.9.0/intl/locales/et/hyphenation/ |
| H A D | hyph_et.dic | 202 aa1p
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