Searched refs:abz_num (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/vt/vt-0.57721/ |
| H A D | vntr_genotyping_record.cpp | 104 abz_num = abz_den = 0; in clear()
291 abz_num /= sqrt(abz_den+1e-6); bcf_update_info_float(hdr, nv, "ABZ", &abz_num, 1); in flush_variant()
349 abz_num += w_dp_ra * (tmp_dp_ra - tmp_al_s1 - tmp_dp_ra*0.5)/sqrt(0.25 * tmp_dp_ra + 1e-3); in flush_sample()
|
| H A D | snp_genotyping_record.cpp | 123 abz_num = abz_den = 0; in clear()
298 abz_num /= sqrt(abz_den+1e-6); bcf_update_info_float(hdr, nv, "ABZ", &abz_num, 1); in flush_variant()
352 abz_num += w_dp_ra * (tmp_dp_ra - tmp_al_s1 - tmp_dp_ra*0.5)/sqrt(0.25 * tmp_dp_ra + 1e-3); in flush_sample()
|
| H A D | indel_genotyping_record.h | 71 float abz_num, abz_den; variable
|
| H A D | vntr_genotyping_record.h | 77 float abz_num, abz_den; variable
|
| H A D | snp_genotyping_record.h | 93 float abz_num, abz_den; variable
|
| H A D | complex_genotyping_record.h | 94 float abz_num, abz_den; variable
|
| H A D | indel_genotyping_record.cpp | 125 abz_num = abz_den = 0; in clear()
311 abz_num /= sqrt(abz_den+1e-6); bcf_update_info_float(hdr, nv, "ABZ", &abz_num, 1); in flush_variant()
365 abz_num += w_dp_ra * (tmp_dp_ra - tmp_al_s1 - tmp_dp_ra*0.5)/sqrt(0.25 * tmp_dp_ra + 1e-3); in flush_sample()
|
| H A D | complex_genotyping_record.cpp | 161 abz_num = abz_den = 0; in clear()
347 abz_num /= sqrt(abz_den+1e-6); bcf_update_info_float(hdr, nv, "ABZ", &abz_num, 1); in flush_variant()
401 abz_num += w_dp_ra * (tmp_dp_ra - tmp_al_s1 - tmp_dp_ra*0.5)/sqrt(0.25 * tmp_dp_ra + 1e-3); in flush_sample()
|
| H A D | genotyping_record.h | 118 float abz_num, abz_den; variable
|