| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | mexttree.cpp | 91 root->addNeighbor(node, len); in generateCaterpillar()
92 node->addNeighbor(root, len); in generateCaterpillar()
107 node->addNeighbor(newleaf, len); in generateCaterpillar()
108 newleaf->addNeighbor(node, len); in generateCaterpillar()
114 node->addNeighbor(newleaf, len); in generateCaterpillar()
144 root->addNeighbor(node, len); in generateBalanced()
145 node->addNeighbor(root, len); in generateBalanced()
202 root->addNeighbor(node, len); in generateUniform()
203 node->addNeighbor(root, len); in generateUniform()
290 root->addNeighbor(node, len); in generateYuleHarding()
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| H A D | phylonodemixlen.cpp | 11 void PhyloNodeMixlen::addNeighbor(Node *node, double length, int id) { in addNeighbor() function in PhyloNodeMixlen
15 void PhyloNodeMixlen::addNeighbor(Node *node, DoubleVector &length, int id) { in addNeighbor() function in PhyloNodeMixlen
17 addNeighbor(node, -1.0, id); in addNeighbor()
19 addNeighbor(node, length[0], id); in addNeighbor()
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| H A D | upperbounds.cpp | 357 treeR->root->addNeighbor(node, len); in generateRandomYH_UB()
358 node->addNeighbor(treeR->root, len); in generateRandomYH_UB()
377 node->addNeighbor(newleaf, len); in generateRandomYH_UB()
378 newleaf->addNeighbor(node, len); in generateRandomYH_UB()
384 node->addNeighbor(newleaf, len); in generateRandomYH_UB()
385 newleaf->addNeighbor(node, len); in generateRandomYH_UB()
393 node->addNeighbor(newleaf, len); in generateRandomYH_UB()
394 newleaf->addNeighbor(node, len); in generateRandomYH_UB()
453 treeA->root->addNeighbor(treeB->root,0.0,tree->branchNum); in RandomTreeAB()
454 treeB->root->addNeighbor(treeA->root,0.0,tree->branchNum); in RandomTreeAB()
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| H A D | node.cpp | 195 void Node::addNeighbor(Node *node, double length, int id) { in addNeighbor() function in Node
199 void Node::addNeighbor(Node *node, DoubleVector &length, int id) { in addNeighbor() function in Node
202 addNeighbor(node, -1.0, id); in addNeighbor()
204 addNeighbor(node, length[0], id); in addNeighbor()
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| H A D | phylonodemixlen.h | 178 virtual void addNeighbor(Node *node, double length, int id = -1);
186 virtual void addNeighbor(Node *node, DoubleVector &length, int id = -1);
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| H A D | mtree.cpp | 301 new_node->addNeighbor((*it), -1.0); in resolveMultifurcation()
304 (*it)->addNeighbor(new_node, -1.0); in resolveMultifurcation()
736 root->addNeighbor(node, branch_len); in readTree()
737 node->addNeighbor(root, branch_len); in readTree()
847 root->addNeighbor(node, brlen); in parseFile()
848 node->addNeighbor(root, brlen); in parseFile()
1484 newnode->addNeighbor(leaves[taxid], len); in convertToTree()
2589 new_taxon->addNeighbor(new_node, 0.0); in insertTaxa()
2590 new_node->addNeighbor(new_taxon, 0.0); in insertTaxa()
2592 new_node->addNeighbor(old_taxon, 0.0); in insertTaxa()
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| H A D | supernode.cpp | 48 void SuperNode::addNeighbor(Node *node, double length, int id) { in addNeighbor() function in SuperNode
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| H A D | supernode.h | 124 virtual void addNeighbor(Node *node, double length, int id = -1);
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| H A D | node.h | 443 virtual void addNeighbor(Node *node, double length, int id = -1);
451 virtual void addNeighbor(Node *node, DoubleVector &length, int id = -1);
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| /dports/lang/mono/mono-5.10.1.57/mcs/class/referencesource/System.ServiceModel/System/ServiceModel/Channels/ |
| H A D | ConnectAlgorithms.cs | 20 EventWaitHandle addNeighbor = new EventWaitHandle(true, EventResetMode.ManualReset); field in System.ServiceModel.Channels.ConnectAlgorithms
54 addNeighbor.Set(); // We are trying to add a neighbor in Connect()
73 …handles.Add(addNeighbor); // Make the last waithandle the add a … in Connect()
100 addNeighbor.Reset(); in Connect()
172 addNeighbor.Reset(); in Connect()
200 addNeighbor.Set(); in Connect()
207 addNeighbor.Set(); in Connect()
216 addNeighbor.Set(); in Connect()
236 addNeighbor.Close(); in IDisposable.Dispose()
322 addNeighbor.Set(); in OnNeighborClosed()
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| /dports/cad/meshlab/meshlab-Meshlab-2020.05/src/plugins_experimental/filter_multiscale_align/lib/Patate/Grenaille/Core/ |
| H A D | covariancePlaneFit.hpp | 28 CovariancePlaneFit<DataPoint, _WFunctor, T>::addNeighbor(const DataPoint& _nei) in addNeighbor() function in CovariancePlaneFit
110 CovariancePlaneDer<DataPoint, _WFunctor, T, Type>::addNeighbor(const DataPoint &_nei) in addNeighbor() function in internal::CovariancePlaneDer
112 bool bResult = Base::addNeighbor(_nei); in addNeighbor()
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| H A D | orientedSphereFit.hpp | 26 OrientedSphereFit<DataPoint, _WFunctor, T>::addNeighbor(const DataPoint& _nei) in addNeighbor() function in OrientedSphereFit
137 OrientedSphereDer<DataPoint, _WFunctor, T, Type>::addNeighbor(const DataPoint &_nei) in addNeighbor() function in internal::OrientedSphereDer
139 bool bResult = Base::addNeighbor(_nei); in addNeighbor()
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| H A D | covariancePlaneFit.h | 90 MULTIARCH inline bool addNeighbor(const DataPoint &_nei);
191 MULTIARCH bool addNeighbor(const DataPoint &nei);
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| H A D | orientedSphereFit.h | 72 MULTIARCH inline bool addNeighbor(const DataPoint &_nei);
169 MULTIARCH bool addNeighbor(const DataPoint &nei);
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| H A D | unorientedSphereFit.h | 78 MULTIARCH inline bool addNeighbor(const DataPoint& _nei);
164 MULTIARCH bool addNeighbor(const DataPoint& _nei);
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| H A D | unorientedSphereFit.hpp | 75 UnorientedSphereFit<DataPoint, _WFunctor, T>::addNeighbor(const DataPoint& _nei) in addNeighbor() function in UnorientedSphereFit
186 OrientedSphereDer<DataPoint, _WFunctor, T, Type>::addNeighbor(const DataPoint &_nei) in addNeighbor() function in internal::OrientedSphereDer
188 bool bResult = Base::addNeighbor(_nei); in addNeighbor()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/pda/ |
| H A D | greedy.cpp | 143 addNeighbor((*it)); in updateOnInitialSet()
173 addNeighbor((*it)); in updateOnLongestPath()
188 void Greedy::addNeighbor(Neighbor* neigh) { in addNeighbor() function in Greedy
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| H A D | greedy.h | 90 void addNeighbor(Neighbor* neigh);
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| /dports/science/lammps/lammps-stable_29Sep2021/lib/atc/ |
| H A D | DislocationExtractor.h | 226 ai.addNeighbor(&aj); in transferLocalLAMMPSAtoms()
229 aj.addNeighbor(&ai); in transferLocalLAMMPSAtoms()
248 ai.addNeighbor(&aj); in transferLocalLAMMPSAtoms()
251 aj.addNeighbor(&ai); in transferLocalLAMMPSAtoms()
265 aj.addNeighbor(&ak); in transferLocalLAMMPSAtoms()
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| /dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/lib/atc/ |
| H A D | DislocationExtractor.h | 226 ai.addNeighbor(&aj); in transferLocalLAMMPSAtoms()
229 aj.addNeighbor(&ai); in transferLocalLAMMPSAtoms()
248 ai.addNeighbor(&aj); in transferLocalLAMMPSAtoms()
251 aj.addNeighbor(&ai); in transferLocalLAMMPSAtoms()
265 aj.addNeighbor(&ak); in transferLocalLAMMPSAtoms()
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| /dports/cad/meshlab/meshlab-Meshlab-2020.05/src/plugins_experimental/filter_multiscale_align/lib/Patate/Grenaille/ |
| H A D | grenaille.mdoc | 56 fit.addNeighbor(neighbor);
94 bool addNeighbor(const DataPoint &nei){};
122 extFit.addNeighbor(neighbor);
150 /*! \see FittingProcedureConcept::addNeighbor */
151 bool addNeighbor(const DataPoint &nei){};
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| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/vflib/builder/ |
| H A D | VFQueryBuilder.java | 189 sourceImpl.addNeighbor(targetImpl); in connect()
190 targetImpl.addNeighbor(sourceImpl); in connect()
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| H A D | NodeBuilder.java | 91 public void addNeighbor(NodeBuilder node) { in addNeighbor() method in NodeBuilder
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| /dports/math/frobby/frobby-0.9.1/src/ |
| H A D | LatticeAnalyzeAction.cpp | 116 void addNeighbor(Neighbor neighbor) { in addNeighbor() function in __anon149916cc0111::NeighborPrinter
190 pr.addNeighbor(Neighbor(lat)); in printNeighbors()
192 pr.addNeighbor(lat.getNeighbor(n)); in printNeighbors()
292 pr.addNeighbor(tri.getNeighborsOnBoundary()[i]); in printPlane()
299 pr.addNeighbor(tri.getNeighborsInInterior()[i]); in printPlane()
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| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/vflib/interfaces/ |
| H A D | INode.java | 100 public void addNeighbor(NodeBuilder node); in addNeighbor() method
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