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Searched refs:ajFilebuffGetFile (Results 1 – 12 of 12) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajassemread.c479 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in ajAsseminLoad()
1003 ajFilebuffGetFile(input->Filebuff), in asseminLoad()
1139 infile = ajFilebuffGetFile(buff); in asseminReadBamHeader()
1279 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadBam()
1288 infile = ajFilebuffGetFile(buff); in asseminLoadBam()
1708 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadMaf()
1720 infile = ajFilebuffGetFile(buff); in asseminLoadMaf()
2140 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadSam()
2149 infile = ajFilebuffGetFile(buff); in asseminLoadSam()
2237 infile = ajFilebuffGetFile(buff); in asseminReadSamAlignments()
H A Dajtextread.c1000 ajFilebuffGetFile(thys->Filebuff), in ajTextinTrace()
1001 ajFileResetPos(ajFilebuffGetFile(thys->Filebuff))); in ajTextinTrace()
1367 ajFileGetPrintnameS(ajFilebuffGetFile(textin->Filebuff))); in textinReadFmt()
1597 ajFilebuffGetFile(textin->Filebuff), in textinRead()
2411 ajFileSeek(ajFilebuffGetFile(textin->Filebuff), qry->Fpos, 0); in ajTextinAccessOffset()
H A Dajvarread.c638 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in ajVarinLoad()
1158 ajFilebuffGetFile(input->Filebuff), in varinLoad()
1294 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadBcf()
1305 ajFileSeek(ajFilebuffGetFile(buff), 0L, SEEK_END); in varinLoadBcf()
1452 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf3x()
1685 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf40()
2030 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf41()
H A Dajseqread.c3525 ajFilebuffGetFile(buff), in seqReadFastqSanger()
3573 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger()
3587 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger()
3630 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger()
3638 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger()
4734 fp = ajFilebuffGetFile(buff); in seqReadNibble()
6233 fp = ajFilebuffGetFile(buff); in seqReadRaw()
10141 infile = ajFilebuffGetFile(buff); in seqReadBam()
10402 infile = ajFilebuffGetFile(buff); in seqReadSam()
10652 infile = ajFilebuffGetFile(buff); in seqReadScf()
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H A Dajfile.h433 AjPFile ajFilebuffGetFile(const AjPFilebuff thys);
H A Dajxmlread.c970 ajFilebuffGetFile(xmlin->Input->Filebuff), in xmlinRead()
H A Dajoboread.c1181 ajFilebuffGetFile(oboin->Input->Filebuff), in oboinRead()
1316 obofile = ajFilebuffGetFile(buff); in oboinReadObo()
H A Dajtaxread.c947 ajFilebuffGetFile(taxin->Input->Filebuff), in taxinRead()
H A Dajresourceread.c1044 ajFilebuffGetFile(resourcein->Input->Filebuff), in resourceinRead()
H A Dajrefseqread.c933 ajFilebuffGetFile(refseqin->Input->Filebuff), in refseqinRead()
H A Dajfile.c4952 AjPFile ajFilebuffGetFile(const AjPFilebuff buff) in ajFilebuffGetFile() function
9588 return ajFilebuffGetFile(buff); in ajFileBuffFile()
H A Dajfeatread.c1509 ajFilebuffGetFile(feattabin->Input->Filebuff), in feattabinRead()