Searched refs:ajFilebuffGetFile (Results 1 – 12 of 12) sorted by relevance
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajassemread.c | 479 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in ajAsseminLoad() 1003 ajFilebuffGetFile(input->Filebuff), in asseminLoad() 1139 infile = ajFilebuffGetFile(buff); in asseminReadBamHeader() 1279 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadBam() 1288 infile = ajFilebuffGetFile(buff); in asseminLoadBam() 1708 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadMaf() 1720 infile = ajFilebuffGetFile(buff); in asseminLoadMaf() 2140 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in asseminLoadSam() 2149 infile = ajFilebuffGetFile(buff); in asseminLoadSam() 2237 infile = ajFilebuffGetFile(buff); in asseminReadSamAlignments()
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H A D | ajtextread.c | 1000 ajFilebuffGetFile(thys->Filebuff), in ajTextinTrace() 1001 ajFileResetPos(ajFilebuffGetFile(thys->Filebuff))); in ajTextinTrace() 1367 ajFileGetPrintnameS(ajFilebuffGetFile(textin->Filebuff))); in textinReadFmt() 1597 ajFilebuffGetFile(textin->Filebuff), in textinRead() 2411 ajFileSeek(ajFilebuffGetFile(textin->Filebuff), qry->Fpos, 0); in ajTextinAccessOffset()
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H A D | ajvarread.c | 638 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in ajVarinLoad() 1158 ajFilebuffGetFile(input->Filebuff), in varinLoad() 1294 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadBcf() 1305 ajFileSeek(ajFilebuffGetFile(buff), 0L, SEEK_END); in varinLoadBcf() 1452 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf3x() 1685 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf40() 2030 ajFilebuffGetFile(buff), ajFilebuffIsEof(buff), in varinLoadVcf41()
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H A D | ajseqread.c | 3525 ajFilebuffGetFile(buff), in seqReadFastqSanger() 3573 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger() 3587 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger() 3630 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger() 3638 ajFilebuffGetFile(buff), thys->Name, in seqReadFastqSanger() 4734 fp = ajFilebuffGetFile(buff); in seqReadNibble() 6233 fp = ajFilebuffGetFile(buff); in seqReadRaw() 10141 infile = ajFilebuffGetFile(buff); in seqReadBam() 10402 infile = ajFilebuffGetFile(buff); in seqReadSam() 10652 infile = ajFilebuffGetFile(buff); in seqReadScf() [all …]
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H A D | ajfile.h | 433 AjPFile ajFilebuffGetFile(const AjPFilebuff thys);
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H A D | ajxmlread.c | 970 ajFilebuffGetFile(xmlin->Input->Filebuff), in xmlinRead()
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H A D | ajoboread.c | 1181 ajFilebuffGetFile(oboin->Input->Filebuff), in oboinRead() 1316 obofile = ajFilebuffGetFile(buff); in oboinReadObo()
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H A D | ajtaxread.c | 947 ajFilebuffGetFile(taxin->Input->Filebuff), in taxinRead()
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H A D | ajresourceread.c | 1044 ajFilebuffGetFile(resourcein->Input->Filebuff), in resourceinRead()
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H A D | ajrefseqread.c | 933 ajFilebuffGetFile(refseqin->Input->Filebuff), in refseqinRead()
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H A D | ajfile.c | 4952 AjPFile ajFilebuffGetFile(const AjPFilebuff buff) in ajFilebuffGetFile() function 9588 return ajFilebuffGetFile(buff); in ajFileBuffFile()
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H A D | ajfeatread.c | 1509 ajFilebuffGetFile(feattabin->Input->Filebuff), in feattabinRead()
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