Searched refs:alIt (Results 1 – 7 of 7) sorted by relevance
71 alIt = NGS.openReadCollection(PrimaryOnly).getAlignments(Alignment.primaryAlignment)74 alIt = NGS.openReadCollection(PrimaryOnly).getAlignments(Alignment.secondaryAlignment)77 alIt = NGS.openReadCollection(PrimaryOnly).getAlignments(Alignment.all)105 alIt = NGS.openReadCollection(WithSecondary).getAlignmentRange(166, 5)106 self.assertTrue(alIt.nextAlignment())107 self.assertEqual(WithSecondary + ".PA.166", alIt.getAlignmentId())
470 ActionListMap::ConstIterator alIt = client->actionLists.constBegin(); in unplugClient() local472 for (; alIt != alEnd; ++alIt) { in unplugClient()473 alIt.value().unplug(container); in unplugClient()477 QString mergingKey = alIt.key(); in unplugClient()485 adjustMergingIndices(-int(alIt.value().count()), mIt); in unplugClient()
118 …ngs.AlignmentIterator alIt = NGS . openReadCollection ( PrimaryOnly ) . getAlignments( Alignment .… in ReadCollection_getAlignments_Primary() local123 …ngs.AlignmentIterator alIt = NGS . openReadCollection ( PrimaryOnly ) . getAlignments( Alignment .… in ReadCollection_getAlignments_Secondary() local128 …ngs.AlignmentIterator alIt = NGS . openReadCollection ( PrimaryOnly ) . getAlignments( Alignment .… in ReadCollection_getAlignments_all() local176 …ngs . AlignmentIterator alIt = NGS . openReadCollection ( WithSecondary ) . getAlignmentRange ( 16… in ReadCollection_getAlignmentRange()177 assertTrue ( alIt . nextAlignment () ); in ReadCollection_getAlignmentRange()178 assertEquals ( WithSecondary + ".PA.166", alIt . getAlignmentId () ); in ReadCollection_getAlignmentRange()
926 auto alIt = defArgList.begin(); in writeDefArgumentList() local927 while (alIt!=defArgList.end()) in writeDefArgumentList()929 Argument a = *alIt; in writeDefArgumentList()1001 ++alIt; in writeDefArgumentList()1002 if (alIt!=defArgList.end()) in writeDefArgumentList()1004 a = *alIt; in writeDefArgumentList()
873 auto alIt = tArgLists.begin(); in getTemplateArgumentsFromName() local874 while ((i=name.find("::",p))!=-1 && alIt!=tArgLists.end()) in getTemplateArgumentsFromName()884 ++alIt; in getTemplateArgumentsFromName()890 return alIt!=tArgLists.end() ? in getTemplateArgumentsFromName()891 std::make_unique<ArgumentList>(*alIt) : in getTemplateArgumentsFromName()