Searched refs:ali_tmp (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhfunc.cpp | 45 Alignment ali_tmp(par.maxseq, par.maxres); in ReadQueryFile() local
46 ali_tmp.GetSeqsFromHMM(q); in ReadQueryFile()
47 ali_tmp.Compress(infile, par.cons, par.maxcol, par.M, par.Mgaps); in ReadQueryFile()
48 *qali = ali_tmp; in ReadQueryFile()
56 Alignment ali_tmp(par.maxseq, par.maxres); in ReadQueryFile() local
59 ali_tmp.Read(inf, infile, par.mark, par.maxcol, par.nseqdis, line); in ReadQueryFile()
63 ali_tmp.Compress(infile, par.cons, par.maxcol, par.M, par.Mgaps); in ReadQueryFile()
65 ali_tmp.Shrink(); in ReadQueryFile()
68 … ali_tmp.FilterForDisplay(par.max_seqid, par.mark, S, par.coverage, par.qid, par.qsc, par.nseqdis); in ReadQueryFile()
71 … ali_tmp.N_filtered = ali_tmp.Filter(par.max_seqid, S, par.coverage, par.qid, par.qsc, par.Ndiff); in ReadQueryFile()
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| H A D | hhdatabase.cpp | 525 Alignment ali_tmp(par.maxseq, par.maxres); in getTemplateA3M() local
526 ali_tmp.GetSeqsFromHMM(t); in getTemplateA3M()
527 ali_tmp.Compress(file, par.cons, par.maxcol, par.M_template, par.Mgaps); in getTemplateA3M()
528 tali = ali_tmp; in getTemplateA3M()
532 Alignment ali_tmp(par.maxseq, par.maxres); in getTemplateA3M() local
535 ali_tmp.Read(inf, file, par.mark, par.maxcol, par.nseqdis, line); in getTemplateA3M()
539 ali_tmp.Compress(file, par.cons, par.maxcol, par.M_template, par.Mgaps); in getTemplateA3M()
541 tali = ali_tmp; in getTemplateA3M()
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