Searched refs:aliasweight (Results 1 – 8 of 8) sorted by relevance
139 world->data->seq[0]->aliasweight = in init_sequences()497 seq->aliasweight[i] = seq->weight[i]; in makeweights()505 if (seq->aliasweight[i - 1] > 0) in makeweights()1129 itemp = seq->aliasweight[j - 1]; in sitesort2()1130 seq->aliasweight[j - 1] = seq->aliasweight[j + gap - 1]; in sitesort2()1221 seq->aliasweight[i - 1] += seq->aliasweight[j - 1]; in sitecombine2()1222 seq->aliasweight[j - 1] = 0; in sitecombine2()1246 if (seq->aliasweight[i - 1] > 0) in sitescrunch2()1268 seq->aliasweight[i - 1] = seq->aliasweight[j - 1]; in sitescrunch2()1843 summ += seq->aliasweight[i] * lterm; in treelike_snp()[all …]
443 memcpy(seq->aliasweight, seq->savealiasweight, sizeof(long)*endsite); in reset_weight()447 seq->aliasweight[0] = 0 ; in reset_weight()
1262 seq->aliasweight[invi++] = (long) invsites*seq->basefrequencies[NUC_A]; in makevalues()1263 seq->aliasweight[invi++] = (long) invsites*seq->basefrequencies[NUC_C]; in makevalues()1264 seq->aliasweight[invi++] = (long) invsites*seq->basefrequencies[NUC_G]; in makevalues()1265 seq->aliasweight[invi] = (long) invsites*seq->basefrequencies[NUC_T]; in makevalues()4148 summ += seq->aliasweight[i] * LOG (tterm[0]); in pseudo_tl_anc()4218 summ += seq->aliasweight[i] * lterm; in pseudo_tl_seq()4298 summ += seq->aliasweight[i] * lterm; in pseudo_tl_snp()4322 summ += seq->aliasweight[i] * lterm; in pseudo_tl_snp()4393 datasum = seq->aliasweight[i / 5] * lterm; in pseudo_tl_snp_unlinked()4396 summ += pow (tterm[0], (MYREAL) seq->aliasweight[i / 5]); in pseudo_tl_snp_unlinked()[all …]
310 … memcpy(beagle->allyweights+numweights, world->data->seq[0]->aliasweight, sizeof(int) * numsites); in fill_beagle_instances()
246 long *aliasweight; // member
1557 myfree(world->data->seq[0]->aliasweight); in free_world()
607 itemp = aliasweight[j - 1]; in sitesort2()608 aliasweight[j - 1] = aliasweight[j + gap - 1]; in sitesort2()639 aliasweight[i - 1] += aliasweight[j - 1]; in sitecombine2()640 aliasweight[j - 1] = 0; in sitecombine2()658 if (aliasweight[i - 1] > 0) in sitescrunch2()673 itemp = aliasweight[i - 1]; in sitescrunch2()674 aliasweight[i - 1] = aliasweight[j - 1]; in sitescrunch2()675 aliasweight[j - 1] = itemp; in sitescrunch2()3691 wt = aliasweight[i]; in standev2()3720 sumw += aliasweight[i]; in standev2()[all …]
614 itemp = aliasweight[j - 1]; in sitesort2()615 aliasweight[j - 1] = aliasweight[j + gap - 1]; in sitesort2()646 aliasweight[i - 1] += aliasweight[j - 1]; in sitecombine2()647 aliasweight[j - 1] = 0; in sitecombine2()665 if (aliasweight[i - 1] > 0) in sitescrunch2()680 itemp = aliasweight[i - 1]; in sitescrunch2()681 aliasweight[i - 1] = aliasweight[j - 1]; in sitescrunch2()682 aliasweight[j - 1] = itemp; in sitescrunch2()3697 wt = aliasweight[i]; in standev2()3726 sumw += aliasweight[i]; in standev2()[all …]