Searched refs:alignMasterFrom (Results 1 – 4 of 4) sorted by relevance
88 …if (pair->alignMasterFrom >= 0 && pair->alignMasterFrom < (int)ts->originalFullSequence->Length() … in CreateTruncatedSequence()90 pair->alignMasterFrom <= pair->alignMasterTo) in CreateTruncatedSequence()92 ts->fromIndex = pair->alignMasterFrom; in CreateTruncatedSequence()
326 int alignMasterFrom, alignMasterTo, alignDependentFrom, alignDependentTo; member in BlockMultipleAlignment
1121 newAlignment->alignMasterFrom = uaBlocks.front()->GetRangeOfRow(row)->from - excess; in BlastNeighbor()1122 if (newAlignment->alignMasterFrom < 0) in BlastNeighbor()1123 newAlignment->alignMasterFrom = 0; in BlastNeighbor()
64 alignMasterFrom(-1), alignMasterTo(-1), alignDependentFrom(-1), alignDependentTo(-1) in BEGIN_SCOPE()111 copy->alignMasterFrom = alignMasterFrom; in Clone()