| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/align_format/ |
| H A D | ilinkoutdb.hpp | 40 BEGIN_SCOPE(align_format)
59 END_SCOPE(align_format)
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| H A D | aln_printer.hpp | 45 BEGIN_SCOPE(align_format)
149 END_SCOPE(align_format)
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| H A D | format_flags.hpp | 42 BEGIN_SCOPE(align_format)
199 END_SCOPE(align_format)
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| H A D | vectorscreen.hpp | 45 BEGIN_SCOPE(align_format)
223 END_SCOPE(align_format)
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| H A D | seqalignfilter.hpp | 50 BEGIN_SCOPE(align_format)
231 END_SCOPE(align_format)
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/align_format/ |
| H A D | ilinkoutdb.hpp | 40 BEGIN_SCOPE(align_format)
59 END_SCOPE(align_format)
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| H A D | aln_printer.hpp | 45 BEGIN_SCOPE(align_format)
149 END_SCOPE(align_format)
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| H A D | format_flags.hpp | 42 BEGIN_SCOPE(align_format)
199 END_SCOPE(align_format)
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| H A D | vectorscreen.hpp | 45 BEGIN_SCOPE(align_format)
223 END_SCOPE(align_format)
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| H A D | seqalignfilter.hpp | 50 BEGIN_SCOPE(align_format)
231 END_SCOPE(align_format)
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/format/ |
| H A D | data4xml2format.hpp | 66 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
82 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
249 void x_InitDB(const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
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| H A D | blastfmtutil.hpp | 53 class NCBI_XBLASTFORMAT_EXPORT CBlastFormatUtil : public align_format::CAlignFormatUtil
165 align_format::CDisplaySeqalign::SeqLocCharOption mask_char,
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| H A D | data4xmlformat.hpp | 91 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbInfo,
291 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbInfo,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/format/ |
| H A D | data4xml2format.hpp | 66 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
82 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
249 void x_InitDB(const vector<align_format::CAlignFormatUtil::SDbInfo> & dbsInfo);
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| H A D | blastfmtutil.hpp | 53 class NCBI_XBLASTFORMAT_EXPORT CBlastFormatUtil : public align_format::CAlignFormatUtil
165 align_format::CDisplaySeqalign::SeqLocCharOption mask_char,
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| H A D | data4xmlformat.hpp | 91 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbInfo,
291 const vector<align_format::CAlignFormatUtil::SDbInfo> & dbInfo,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
| H A D | sam.cpp | 59 sorted.Set().sort(align_format::CAlignFormatUtil::SortHspByMasterStartAscending); in x_Print()
72 CRef<CSeq_align> dense_seg = align_format::CAlignFormatUtil::CreateDensegFromDendiag(**itr); in Print()
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| H A D | blastfmtutil.cpp | 58 USING_SCOPE(align_format);
448 align_format::CDisplaySeqalign::SeqLocCharOption mask_char, in s_MaskQuerySeq()
560 align_format::CDisplaySeqalign::SeqLocCharOption mask_char, in GetWholeAlnSeqStrings()
633 int master_coverage = align_format::CAlignFormatUtil::GetMasterCoverage(tmp_align_set); in InsertSubjectScores()
647 int uniq_coverage = align_format::CAlignFormatUtil::GetUniqSeqCoverage(tmp_align_set); in InsertSubjectScores()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/ |
| H A D | sam.cpp | 59 sorted.Set().sort(align_format::CAlignFormatUtil::SortHspByMasterStartAscending); in x_Print()
72 CRef<CSeq_align> dense_seg = align_format::CAlignFormatUtil::CreateDensegFromDendiag(**itr); in Print()
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| H A D | blastfmtutil.cpp | 58 USING_SCOPE(align_format);
448 align_format::CDisplaySeqalign::SeqLocCharOption mask_char, in s_MaskQuerySeq()
560 align_format::CDisplaySeqalign::SeqLocCharOption mask_char, in GetWholeAlnSeqStrings()
633 int master_coverage = align_format::CAlignFormatUtil::GetMasterCoverage(tmp_align_set); in InsertSubjectScores()
647 int uniq_coverage = align_format::CAlignFormatUtil::GetUniqSeqCoverage(tmp_align_set); in InsertSubjectScores()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
| H A D | format_flags.cpp | 34 BEGIN_SCOPE(align_format)
252 END_SCOPE(align_format)
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| H A D | Makefile.in | 3 LIB_PROJ = align_format
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/unit_test/ |
| H A D | showdefline_unit_test.cpp | 53 using namespace ncbi::align_format;
63 size_t deflines_to_show = align_format::kDfltArgNumDescriptions, in CShowBlastDeflineTest()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/unit_test/ |
| H A D | showdefline_unit_test.cpp | 53 using namespace ncbi::align_format;
63 size_t deflines_to_show = align_format::kDfltArgNumDescriptions, in CShowBlastDeflineTest()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
| H A D | format_flags.cpp | 34 BEGIN_SCOPE(align_format)
252 END_SCOPE(align_format)
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