| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/pairwise_alignment/ |
| H A D | NWAligner.cpp | 86 QByteArray aligned1; in align() local
99 aligned1.prepend(seq1[i - 1]); in align()
104 aligned1.prepend(seq1[i - 1]); in align()
109 aligned1.prepend(U2Msa::GAP_CHAR); in align()
116 aligned1.prepend(seq1[i - 1]); in align()
122 aligned1.prepend(U2Msa::GAP_CHAR); in align()
128 result->addRow("seq1", aligned1); in align()
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| /dports/biology/hyphy/hyphy-2.5.33/res/TemplateBatchFiles/ |
| H A D | SeqAlignmentNucShared.ibf | 243 aligned1 = aligned[1];
261 …fprintf (stdout, k, "/", s2, " ", fullRefSeq[k]&&1, ":", aligned1[s2]&&1, ":", aligned2[s2]&&1, "\…
263 while ((fullRefSeq[k]&&1)!=(aligned1[s2]&&1) && k < refLength) {
277 …fprintf (stdout, "\n", startingPosition[seqCounter][0], "\n\n",fullRefSeq,"\n\n", aligned1, "\n\n"…
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| /dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
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| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
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| /dports/devel/avr-gcc/gcc-10.2.0/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; struct
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
|
| /dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
|
| /dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
|
| /dports/lang/gcc10-devel/gcc-10-20211008/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
|
| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gcc.target/aarch64/sve/acle/general/ |
| H A D | attributes_8.c | 89 struct aligned1 { int x; aligned_fixed1 y; }; argument
99 ASSERT (check_aligned1, sizeof (struct aligned1) == N / 4);
|
| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/alignment/ |
| H A D | _pairwise.py | 345 aligned1, aligned2, score, seq1_start_position, seq2_start_position = \
351 msa = TabularMSA(aligned1 + aligned2)
633 aligned1, aligned2, score, seq1_start_position, seq2_start_position = \
639 msa = TabularMSA(aligned1 + aligned2)
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| /dports/sysutils/czkawka/czkawka-3.3.1/cargo-crates/hamming-0.1.3/src/ |
| H A D | distance_.rs | 99 let aligned1 = (ptr1 + alignment - 1) / alignment * alignment; in distance_fast() localVariable
101 let distance1 = aligned1 - ptr1; in distance_fast()
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| /dports/print/ghostscript9-agpl-base/ghostscript-9.52/base/ |
| H A D | gxhintn.c | 345 if (self->aligned1 <= align && self->q1 > quality) in t1_hint__set_aligned_coord()
346 self->ag1 = gc, self->aligned1 = align, self->q1 = quality; in t1_hint__set_aligned_coord()
1447 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2284 p_ai = (!k ? &self->hint[i].aligned0 : &self->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2285 p_oi = (!k ? &self->hint[i].aligned1 : &self->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2339 enum t1_align_type aligned1 = self->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2346 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2348 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2354 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
2359 else if (aligned0 == botzn || aligned1 == botzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 81 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
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| /dports/print/ghostscript9-agpl-x11/ghostscript-9.52/base/ |
| H A D | gxhintn.c | 345 if (self->aligned1 <= align && self->q1 > quality) in t1_hint__set_aligned_coord()
346 self->ag1 = gc, self->aligned1 = align, self->q1 = quality; in t1_hint__set_aligned_coord()
1447 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2284 p_ai = (!k ? &self->hint[i].aligned0 : &self->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2285 p_oi = (!k ? &self->hint[i].aligned1 : &self->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2339 enum t1_align_type aligned1 = self->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2346 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2348 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2354 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
2359 else if (aligned0 == botzn || aligned1 == botzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 81 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
|
| /dports/print/ghostscript8-x11/ghostscript-8.71/base/ |
| H A D | gxhintn.c | 363 if (this->aligned1 <= align && this->q1 > quality) in t1_hint__set_aligned_coord()
364 this->ag1 = gc, this->aligned1 = align, this->q1 = quality; in t1_hint__set_aligned_coord()
1600 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2460 p_ai = (!k ? &this->hint[i].aligned0 : &this->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2461 p_oi = (!k ? &this->hint[i].aligned1 : &this->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2474 p_aj = (!k ? &this->hint[j].aligned0 : &this->hint[j].aligned1); in t1_hinter__unfix_opposite_to_common()
2516 enum t1_align_type aligned1 = this->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2523 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2525 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2531 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 89 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
|
| /dports/print/ghostscript8-base/ghostscript-8.71/base/ |
| H A D | gxhintn.c | 363 if (this->aligned1 <= align && this->q1 > quality) in t1_hint__set_aligned_coord()
364 this->ag1 = gc, this->aligned1 = align, this->q1 = quality; in t1_hint__set_aligned_coord()
1600 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2460 p_ai = (!k ? &this->hint[i].aligned0 : &this->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2461 p_oi = (!k ? &this->hint[i].aligned1 : &this->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2474 p_aj = (!k ? &this->hint[j].aligned0 : &this->hint[j].aligned1); in t1_hinter__unfix_opposite_to_common()
2516 enum t1_align_type aligned1 = this->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2523 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2525 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2531 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 89 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
|
| /dports/print/ghostscript9-x11/ghostscript-9.06/base/ |
| H A D | gxhintn.c | 362 if (self->aligned1 <= align && self->q1 > quality) in t1_hint__set_aligned_coord()
363 self->ag1 = gc, self->aligned1 = align, self->q1 = quality; in t1_hint__set_aligned_coord()
1599 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2458 p_ai = (!k ? &self->hint[i].aligned0 : &self->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2459 p_oi = (!k ? &self->hint[i].aligned1 : &self->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2514 enum t1_align_type aligned1 = self->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2521 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2523 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2529 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
2534 else if (aligned0 == botzn || aligned1 == botzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 91 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
|
| /dports/print/ghostscript9-base/ghostscript-9.06/base/ |
| H A D | gxhintn.c | 362 if (self->aligned1 <= align && self->q1 > quality) in t1_hint__set_aligned_coord()
363 self->ag1 = gc, self->aligned1 = align, self->q1 = quality; in t1_hint__set_aligned_coord()
1599 hint->aligned0 = hint->aligned1 = unaligned; in t1_hinter__stem()
2458 p_ai = (!k ? &self->hint[i].aligned0 : &self->hint[i].aligned1); in t1_hinter__unfix_opposite_to_common()
2459 p_oi = (!k ? &self->hint[i].aligned1 : &self->hint[i].aligned0); in t1_hinter__unfix_opposite_to_common()
2514 enum t1_align_type aligned1 = self->hint[i].aligned1; in t1_hinter__compute_opposite_stem_coords() local
2521 if (aligned0 > aligned1) in t1_hinter__compute_opposite_stem_coords()
2523 else if (aligned0 < aligned1) in t1_hinter__compute_opposite_stem_coords()
2529 if (aligned0 == topzn || aligned1 == topzn) in t1_hinter__compute_opposite_stem_coords()
2534 else if (aligned0 == botzn || aligned1 == botzn) in t1_hinter__compute_opposite_stem_coords()
[all …]
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| H A D | gxhintn.h | 91 enum t1_align_type aligned0, aligned1; /* ag0, ag1 is aligned */ member
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| /dports/devel/openocd/openocd-0.11.0/src/flash/nor/ |
| H A D | core.c | 731 target_addr_t aligned1 = flash_write_align_end(bank, addr1); in flash_write_check_gap() local
733 return aligned1 + bank->minimal_write_gap < aligned2; in flash_write_check_gap()
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| /dports/devel/llvm80/llvm-8.0.1.src/test/Instrumentation/EfficiencySanitizer/ |
| H A D | working_set_strict.ll | 9 define i8 @aligned1(i8* %a) {
|